Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 2130.5 1104 100.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 2024.6 1107 93.9
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1812.0 1104 83.3
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 0.0e+00 1569.3 928 87.0
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1231.9 1121 58.8
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1214.1 1120 57.7
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1213.4 1120 57.4
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1206.0 1190 55.5
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1184.9 1124 57.6
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1179.5 1105 57.3
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1175.2 1123 56.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1159.8 1107 56.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1159.4 1118 56.1
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1156.7 1118 55.8
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1154.4 1109 55.4
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1154.0 1109 56.7
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1149.0 1117 55.2
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1148.7 1118 55.7
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1142.1 1112 55.6
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1140.6 1120 54.1
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1135.6 1119 54.5
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1119 55.4
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1123.2 1112 54.5
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1120.9 1112 54.5
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1091.3 1104 52.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1086.6 1106 53.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1084.3 1112 52.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1080.9 1113 53.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 7.6e-312 1074.3 1113 52.7
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 5.3e-311 1071.2 1119 52.3
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 1.4e-303 1046.6 1101 51.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.3e-303 1045.8 1055 53.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 4.0e-303 1045.0 1117 51.3
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.0e-302 1042.7 1098 51.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 5.9e-299 1031.2 1117 50.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 7.7e-299 1030.8 1118 50.9
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.9e-297 1026.2 1103 50.4
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.5e-297 1025.8 1110 51.4
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.2e-296 1023.5 1111 50.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.6e-296 1023.1 1116 50.4
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.0e-295 1020.4 1113 50.8
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.4e-295 1020.0 1122 49.2
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 3.0e-295 1018.8 1118 51.0
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.0e-295 1018.8 1122 49.8
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.2e-293 1012.7 1218 48.0
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 5.9e-291 1004.6 1107 49.0
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 7.8e-291 1004.2 1114 50.9
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 8.6e-290 1000.7 1112 49.1
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.9e-289 999.6 1112 50.6
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 5.6e-289 998.0 1113 50.1
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 6.1e-288 994.6 1112 49.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 4.4e-286 988.4 1120 49.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 7.5e-286 987.6 1120 48.6
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.0e-282 977.2 1028 51.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.3e-282 976.9 1123 48.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.1e-281 973.8 1104 49.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.5e-281 973.4 1100 49.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.3e-277 960.3 1118 48.7
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.1e-276 957.2 1118 47.7
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 9.5e-273 944.1 1119 46.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 4.0e-271 938.7 1110 48.4
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.7e-269 932.2 1153 45.5
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 3.2e-268 929.1 1119 46.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.2e-267 927.2 1120 46.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.1e-267 926.4 1121 46.2
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 5.1e-266 921.8 1119 45.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.1e-265 920.6 1120 46.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.3e-265 919.1 1105 46.5
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.1e-264 916.4 1105 46.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.1e-263 914.1 1114 46.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.2e-262 910.6 1113 45.8
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-262 910.6 1028 50.4
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.4e-262 909.1 1039 48.9
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.9e-261 906.0 1114 45.8
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.8e-261 905.6 1118 45.6
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 3.8e-261 905.6 1132 45.6
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.4e-260 902.9 1114 45.8
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 9.2e-260 901.0 1107 45.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.2e-259 900.6 1097 47.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.7e-258 896.7 1119 45.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.4e-255 887.1 966 50.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 8.4e-253 877.9 1118 45.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.4e-247 860.5 1053 46.6
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.7e-245 853.6 1110 44.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.8e-242 843.6 1116 44.5
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.9e-241 840.1 1061 46.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.0e-238 830.1 1101 45.0
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.1e-231 806.2 920 48.7
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.3e-221 774.2 917 48.5
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 2.2e-221 773.5 1120 40.5
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.5e-220 770.0 1099 43.3
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 3.2e-220 769.6 1035 43.2
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.1e-219 766.9 1118 40.7
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.4e-207 726.9 922 45.2
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.7e-158 563.9 1028 36.1
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 3.0e-141 507.3 1165 32.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.8e-129 466.5 455 58.0
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.7e-126 457.6 1142 29.8
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.1e-122 444.1 610 43.1
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.9e-116 424.9 657 40.6
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.4e-112 409.5 541 42.7
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.6e-110 403.7 515 44.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.6e-105 387.9 442 49.5
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.9e-103 381.7 344 57.3
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 9.4e-103 379.4 1102 27.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.6e-102 377.5 458 47.4
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.4e-97 360.9 184 96.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.4e-92 344.0 445 45.8
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 5.0e-72 277.3 1287 24.3
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.9e-65 253.8 197 66.0
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.0e-61 243.0 184 63.6
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.4e-58 231.9 161 69.6
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.9e-57 227.3 333 42.3
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 5.2e-53 214.2 249 51.0
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 7.5e-52 210.3 187 58.8
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.3e-48 198.7 246 49.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.4e-44 184.9 223 44.4
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.5e-44 183.7 194 53.6
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.1e-37 163.3 159 50.9
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 5.6e-31 141.0 172 44.8
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 2.1e-30 139.0 136 55.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.5e-28 132.9 123 53.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.6e-28 132.1 180 45.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.8e-28 131.0 123 52.8
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.2e-26 125.2 119 52.9
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 4.2e-26 124.8 138 49.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 4.2e-26 124.8 138 49.3
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.6e-24 117.5 177 37.9
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 6.6e-24 117.5 282 30.9
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-22 112.5 71 76.1
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.8e-19 101.7 318 25.5
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 6.4e-19 100.9 75 64.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 3.2e-18 98.6 63 58.7
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.1e-18 97.4 122 43.4
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 9.3e-18 97.1 93 52.7
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 7.9e-17 94.0 55 81.8
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.6e-14 86.3 92 46.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-13 83.6 127 40.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.4e-13 83.2 88 46.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 6.9e-13 80.9 62 62.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 3.4e-12 78.6 73 57.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 4.5e-12 78.2 54 75.9
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 4.5e-12 78.2 156 32.1
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.7e-09 68.9 48 75.0
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.7e-09 68.9 48 75.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 3.0e-08 65.5 88 44.3
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 3.3e-07 62.0 87 46.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 7.4e-07 60.8 48 56.2


User provided reference genes

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