Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 2.5e-300 1034.6 521 100.0
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 5.9e-249 864.0 579 78.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.2e-233 813.1 580 74.8
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 8.6e-224 780.4 582 70.8
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.5e-185 652.1 575 61.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 6.7e-184 647.9 580 60.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 1.6e-182 643.3 575 60.9
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.9e-178 629.8 580 57.9
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 4.2e-178 628.6 583 58.3
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 5.5e-178 628.2 579 58.2
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.6e-177 626.7 579 57.7
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 6.0e-177 624.8 579 57.5
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 4.3e-175 618.6 582 57.9
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.3e-175 618.6 580 57.6
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 5.6e-175 618.2 592 56.2
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 7.4e-175 617.8 563 58.4
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 1.6e-174 616.7 580 57.4
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 2.1e-174 616.3 591 56.5
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.8e-174 615.1 580 57.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-173 614.0 577 57.7
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.4e-173 613.6 580 57.4
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.3e-173 611.7 576 56.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 5.3e-173 611.7 576 56.9
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 6.9e-173 611.3 575 57.2
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 1.2e-172 610.5 579 56.5
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 7.6e-172 607.8 590 57.1
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.3e-171 607.1 576 56.1
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.9e-171 605.9 575 56.3
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 2.9e-171 605.9 575 56.2
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.4e-170 603.6 579 56.1
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.5e-170 602.8 581 57.0
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 3.2e-170 602.4 576 55.7
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 3.2e-170 602.4 575 57.0
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 9.3e-170 600.9 574 56.1
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.2e-169 600.5 579 56.0
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.7e-169 599.4 580 55.7
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 6.1e-169 598.2 580 55.5
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.3e-168 597.0 575 57.0
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.3e-168 596.3 581 55.8
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.6e-166 590.1 575 56.3
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.6e-166 590.1 581 54.6
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.8e-166 589.3 600 54.5
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.1e-165 587.4 573 55.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 3.1e-165 585.9 581 55.4
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.5e-164 583.6 579 54.9
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.1e-162 577.4 596 54.0
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.4e-162 577.0 580 54.1
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 3.2e-162 575.9 593 54.1
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 4.2e-162 575.5 609 53.2
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.9e-160 568.9 579 53.9
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.3e-158 561.6 525 57.5
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 6.3e-158 561.6 585 53.0
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.5e-156 557.0 590 52.0
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 7.7e-156 554.7 577 53.2
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 7.7e-156 554.7 579 52.2
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.3e-155 553.9 581 51.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.2e-155 553.1 592 52.4
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.2e-155 553.1 598 51.5
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 5.5e-154 548.5 575 52.3
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 5.5e-154 548.5 575 52.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 7.2e-154 548.1 595 52.1
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 7.2e-154 548.1 595 52.1
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 1.2e-153 547.4 575 52.3
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.2e-153 547.4 595 51.8
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.6e-153 547.0 584 52.7
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 2.1e-153 546.6 575 52.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.6e-153 545.8 599 51.3
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 3.9e-152 542.3 575 52.7
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 3.9e-152 542.3 575 52.7
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.1e-152 542.0 574 52.1
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 6.7e-152 541.6 574 51.9
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.0e-151 540.0 586 51.4
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.4e-151 538.9 508 57.1
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 5.7e-151 538.5 575 52.3
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 2.2e-150 536.6 578 51.7
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 2.8e-150 536.2 575 51.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 8.2e-150 534.6 575 51.7
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 1.8e-149 533.5 583 51.3
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 9.1e-149 531.2 579 52.0
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 2.1e-145 520.0 597 49.2
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 2.3e-144 516.5 575 51.1
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 9.7e-143 511.1 575 50.6
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 3.7e-142 509.2 571 50.6
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.7e-142 509.2 596 50.7
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 4.1e-141 505.8 575 49.9
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 2.6e-140 503.1 583 49.9
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 2.9e-139 499.6 430 59.3
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 4.7e-137 492.3 589 48.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.4e-136 490.7 575 49.2
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 2.0e-135 486.9 576 49.0
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 2.6e-135 486.5 532 53.2
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.7e-129 465.7 545 49.4
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 2.8e-126 456.4 550 48.9
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.2e-119 434.5 450 51.3
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.4e-119 433.0 523 48.8
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 5.7e-119 432.2 397 56.2
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.5e-116 422.5 460 52.6
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.2e-113 414.5 522 48.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 8.0e-113 411.8 582 44.0
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.6e-103 380.2 586 39.9
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 7.3e-98 362.1 599 36.4
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 4.4e-95 352.8 543 42.2
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.7e-94 350.9 580 35.5
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 2.1e-76 290.8 593 31.5
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.9e-69 267.7 196 64.3
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.1e-66 258.5 560 30.0
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 6.0e-60 236.1 268 51.9
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.9e-45 188.0 147 62.6
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.3e-43 181.0 218 45.0
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.9e-38 164.1 122 64.8
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.0e-35 154.1 173 50.3
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 4.4e-26 123.6 112 55.4
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 7.5e-26 122.9 202 37.6
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 9.7e-26 122.5 81 71.6
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 8.2e-25 119.4 80 71.2
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.1e-24 117.5 86 66.3
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.5e-23 114.0 204 37.7
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 8.0e-20 102.8 116 45.7
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.0e-18 98.2 110 45.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.1e-16 92.4 85 55.3
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.4e-11 75.5 70 58.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.5e-10 72.0 70 57.1
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.5e-10 72.0 77 57.1
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 4.4e-10 70.5 70 55.7
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 2.8e-09 67.8 65 56.9
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 9.2e-08 62.8 43 69.8
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 7.7e-07 59.7 64 45.3
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 1.0e-06 59.3 195 27.7


User provided reference genes

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