Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024405.2 Cucumis melo HOM05D008135 ORTHO05D010260 3.0e-38 161.4 84 100.0
CsaV3_7G034940 Cucumis sativus L. HOM05D008135 ORTHO05D010260 2.6e-37 158.3 84 97.6
ClCG09G000520 Citrullus lanatus HOM05D008135 ORTHO05D010260 3.9e-33 144.4 84 89.3
Sed0004354 Sechium edule HOM05D008135 ORTHO05D010260 1.3e-25 119.4 86 75.6
FAN05G3342 Fragaria x ananassa HOM05D008135 ORTHO05D010260 1.1e-14 83.2 82 59.8
Potri.001G194100 Populus trichocarpa HOM05D008135 ORTHO05D010260 2.4e-14 82.0 83 55.4
FvH4_6g32890 Fragaria vesca HOM05D008135 ORTHO05D010260 3.1e-14 81.6 82 59.8
Medtr8g015560 Medicago truncatula HOM05D008135 ORTHO05D010260 5.2e-14 80.9 81 59.3
FAN02G1144 Fragaria x ananassa HOM05D008135 ORTHO05D010260 6.8e-14 80.5 82 58.5
RcHm_v2.0_Chr2g0142321 Rosa chinensis HOM05D008135 ORTHO05D010260 6.8e-14 80.5 82 57.3
CiPaw.01G227600 Carya illinoinensis HOM05D008135 ORTHO05D010260 8.9e-14 80.1 83 57.8
Duzib235G1506 Durio zibethinus HOM05D008135 ORTHO05D010260 1.2e-13 79.7 83 53.0
Prupe.3G053100 Prunus persica HOM05D008135 ORTHO05D010260 4.4e-13 77.8 79 54.4
Glyma.08G196600 Glycine max HOM05D008135 ORTHO05D010260 7.6e-13 77.0 79 57.0
Phvul.010G142400 Phaseolus vulgaris HOM05D008135 ORTHO05D010260 1.3e-12 76.3 82 54.9
Glyma.07G012900 Glycine max HOM05D008135 ORTHO05D010260 1.7e-12 75.9 79 55.7
Atru.chr1.3625 Acer truncatum HOM05D008135 ORTHO05D010260 2.9e-12 75.1 85 52.9
Actinidia32128 Actinidia chinensis HOM05D008135 ORTHO05D010260 3.8e-12 74.7 77 57.1
Manes.11G029100 Manihot esculenta HOM05D008135 ORTHO05D010260 3.8e-12 74.7 83 51.8
Thecc.06G106900 Theobroma cacao HOM05D008135 ORTHO05D010260 6.4e-12 73.9 83 50.6
Cfa003610 Carpinus fangiana HOM05D008135 ORTHO05D010260 1.1e-11 73.2 82 51.2
Oeu052813.1 Olea europaea HOM05D008135 ORTHO05D010260 1.4e-11 72.8 59 62.7
Lj3g0018742 Lotus japonicus HOM05D008135 ORTHO05D010260 2.4e-11 72.0 81 56.8
Solyc03g121340.1 Solanum lycopersicum HOM05D008135 ORTHO05D010260 2.4e-11 72.0 83 51.8
Gohir.A10G062350 Gossypium hirsutum HOM05D008135 ORTHO05D010260 4.1e-11 71.2 83 50.6
Sopen03g040150 Solanum pennellii HOM05D008135 ORTHO05D010260 4.1e-11 71.2 65 61.5
Gorai.011G068000 Gossypium raimondii HOM05D008135 ORTHO05D010260 5.4e-11 70.9 83 50.6
QL05p015599 Quercus lobata HOM05D008135 ORTHO05D010260 5.4e-11 70.9 72 59.7
Psat4g194640 Pisum sativum HOM05D008135 ORTHO05D010260 7.1e-11 70.5 80 55.0
Cpa.g.sc131.24 Carica papaya HOM05D008135 ORTHO05D010260 9.2e-11 70.1 83 50.6
vmacro18825 Vaccinium macrocarpon HOM05D008135 ORTHO05D010260 1.2e-10 69.7 65 58.5
arahy.Tifrunner.gnm1.ann1.4P5WGY Arachis hypogaea HOM05D008135 ORTHO05D010260 1.6e-10 69.3 82 54.9
Gohir.D10G064050 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.6e-10 69.3 83 49.4
QL05p015762 Quercus lobata HOM05D008135 ORTHO05D010260 1.6e-10 69.3 74 55.4
Nitab4.5_0006071g0080 Nicotiana tabacum HOM05D008135 ORTHO05D010260 2.1e-10 68.9 68 51.5
QL05p015735 Quercus lobata HOM05D008135 ORTHO05D010260 2.7e-10 68.6 71 59.2
Lalb_Chr25g0280561 Lupinus albus HOM05D008135 ORTHO05D010260 3.5e-10 68.2 80 50.0
arahy.Tifrunner.gnm1.ann1.7STU2J Arachis hypogaea HOM05D008135 ORTHO05D010260 4.6e-10 67.8 82 54.9
Sabra01G0135100 Salix brachista HOM05D008135 ORTHO05D010260 1.3e-09 66.2 76 51.3
CSS0040576 Camellia sinensis var. sinensis HOM05D008135 ORTHO05D010260 1.7e-09 65.9 84 51.2
Manes.04G137100 Manihot esculenta HOM05D008135 ORTHO05D010260 2.3e-09 65.5 85 50.6
Rhsim08G0230800 Rhododendron simsii HOM05D008135 ORTHO05D010260 3.0e-09 65.1 58 56.9
COL.COLO4_30598 Corchorus olitorius HOM05D008135 ORTHO05D010260 3.9e-09 64.7 86 47.7
Peaxi162Scf00038g01219 Petunia axillaris HOM05D008135 ORTHO05D010260 3.9e-09 64.7 83 49.4
MSTRG.11003 Avicennia marina HOM05D008135 ORTHO05D010260 8.7e-09 63.5 58 55.2
TAR383G0415 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.9e-08 62.4 78 48.7
ECA232G1244 Erigeron canadensis HOM05D008135 ORTHO05D010260 2.5e-08 62.0 66 50.0
Migut.I00998 Erythranthe guttata HOM05D008135 ORTHO05D010260 2.5e-08 62.0 51 60.8
Eucgr.J02889 Eucalyptus grandis HOM05D008135 ORTHO05D010260 7.3e-08 60.5 83 48.2
DCAR_026371 Daucus carota HOM05D008135 ORTHO05D010260 1.2e-07 59.7 79 51.9
TAR624G1313 Trochodendron aralioides HOM05D008135 ORTHO05D010260 2.8e-07 58.5 50 54.0
Actinidia21739 Actinidia chinensis HOM05D008135 ORTHO05D010260 3.6e-07 58.2 73 52.1
Gohir.D05G135300 Gossypium hirsutum HOM05D008135 ORTHO05D010260 6.2e-07 57.4 84 42.9
unitig_88.g27599 Utricularia gibba HOM05D008135 ORTHO05D010260 6.2e-07 57.4 58 50.0
Gorai.009G139100 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.4e-06 56.2 84 42.9
Gohir.A05G133400 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.8e-06 55.8 84 42.9
THA.LOC109116552 Tarenaya hassleriana HOM05D008135 ORTHO05D010260 1.8e-06 55.8 53 49.1
DCAR_007606 Daucus carota HOM05D008135 ORTHO05D010260 2.4e-06 55.5 64 56.2
MBI01_g16574_MAGBIO Magnolia biondii HOM05D008135 ORTHO05D010260 5.2e-06 54.3 57 52.6


User provided reference genes

Program Settings