Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 6.9e-59 230.3 109 100.0
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 3.4e-50 201.4 109 87.2
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.1e-45 186.4 115 80.0
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 2.7e-34 148.7 113 69.0
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 1.0e-30 136.7 104 67.3
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 6.3e-20 100.9 114 47.4
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 6.3e-20 100.9 109 52.3
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 5.9e-18 94.4 109 46.8
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 5.0e-17 91.3 75 62.7
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 6.6e-17 90.9 83 57.8
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.6e-17 90.9 83 57.8
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.6e-17 90.9 83 57.8
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 8.6e-17 90.5 107 44.9
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 1.1e-16 90.1 86 55.8
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 4.3e-16 88.2 75 61.3
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 9.5e-16 87.0 64 67.2
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 1.2e-15 86.7 111 45.9
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.6e-15 86.3 119 42.0
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.6e-15 86.3 104 45.2
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.8e-15 85.5 111 46.8
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.6e-15 85.1 91 51.6
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 3.6e-15 85.1 111 46.8
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 8.0e-15 84.0 104 44.2
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 1.0e-14 83.6 86 51.2
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.4e-14 83.2 119 43.7
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.4e-14 83.2 76 56.6
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 1.4e-14 83.2 108 49.1
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 1.4e-14 83.2 68 64.7
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 1.4e-14 83.2 74 58.1
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.0e-14 82.0 74 58.1
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 6.8e-14 80.9 84 56.0
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 2.0e-13 79.3 91 50.5
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 2.6e-13 79.0 89 50.6
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 2.6e-13 79.0 91 49.5
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.6e-13 79.0 74 56.8
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.4e-13 78.6 106 43.4
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 4.4e-13 78.2 87 50.6
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 5.8e-13 77.8 78 53.8
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 7.5e-13 77.4 117 41.0
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 1.3e-12 76.6 59 64.4
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 1.7e-12 76.3 103 45.6
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 2.2e-12 75.9 90 45.6
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 2.9e-12 75.5 110 41.8
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 3.7e-12 75.1 116 41.4
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 3.7e-12 75.1 73 53.4
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 4.9e-12 74.7 55 69.1
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 6.4e-12 74.3 74 52.7
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 6.4e-12 74.3 76 56.6
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 8.3e-12 73.9 116 42.2
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.1e-11 73.6 100 43.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.1e-11 73.6 100 43.0
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 1.1e-11 73.6 115 39.1
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 1.4e-11 73.2 113 42.5
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 2.4e-11 72.4 94 45.7
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 2.4e-11 72.4 120 36.7
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 3.2e-11 72.0 55 58.2
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 3.2e-11 72.0 103 40.8
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.2e-11 72.0 121 40.5
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 3.2e-11 72.0 120 40.8
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 3.2e-11 72.0 52 65.4
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 4.1e-11 71.6 119 36.1
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 5.4e-11 71.2 111 37.8
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 7.0e-11 70.9 82 45.1
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 7.0e-11 70.9 120 40.8
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 7.0e-11 70.9 52 61.5
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 7.0e-11 70.9 52 63.5
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 9.2e-11 70.5 84 46.4
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.2e-10 70.1 109 40.4
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 2.7e-10 68.9 92 43.5
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 3.5e-10 68.6 82 43.9
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 3.5e-10 68.6 82 43.9
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 3.5e-10 68.6 62 58.1
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 3.5e-10 68.6 55 60.0
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 3.5e-10 68.6 57 66.7
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 4.6e-10 68.2 82 43.9
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 4.6e-10 68.2 82 43.9
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 4.6e-10 68.2 91 45.1
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 6.0e-10 67.8 53 60.4
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 6.0e-10 67.8 84 45.2
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 7.8e-10 67.4 96 43.8
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.3e-09 66.6 64 57.8
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.7e-09 66.2 93 40.9
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.7e-09 66.2 53 58.5
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 3.0e-09 65.5 83 44.6
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 5.0e-09 64.7 37 70.3
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 5.0e-09 64.7 64 53.1
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 6.6e-09 64.3 117 37.6
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 6.6e-09 64.3 61 55.7
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 6.6e-09 64.3 61 52.5
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 8.6e-09 63.9 63 54.0
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.1e-08 63.5 65 56.9
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.1e-08 63.5 55 56.4
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 1.5e-08 63.2 83 44.6
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.5e-08 63.2 63 54.0
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.9e-08 62.8 110 39.1
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 2.5e-08 62.4 102 43.1
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 2.5e-08 62.4 86 43.0
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 2.5e-08 62.4 67 49.3
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 3.3e-08 62.0 72 51.4
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 5.6e-08 61.2 43 62.8
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 5.6e-08 61.2 100 39.0
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 7.3e-08 60.8 82 46.3
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.3e-08 60.8 67 46.3
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 9.5e-08 60.5 100 37.0
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 9.5e-08 60.5 67 49.3
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 9.5e-08 60.5 67 49.3
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 9.5e-08 60.5 54 55.6
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 1.2e-07 60.1 115 38.3
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 1.2e-07 60.1 115 38.3
BcaB05g23660 Brassica carinata HOM05D002144 ORTHO05D002170 2.1e-07 59.3 115 34.8
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 2.1e-07 59.3 101 34.7
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.8e-07 58.9 52 51.9
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 2.8e-07 58.9 89 40.4
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 3.6e-07 58.5 69 47.8
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 4.7e-07 58.2 118 37.3
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 4.7e-07 58.2 83 44.6
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 6.2e-07 57.8 83 41.0
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 6.2e-07 57.8 100 38.0
CDE06G1752 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 8.0e-07 57.4 84 35.7
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 8.0e-07 57.4 109 39.4
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 1.1e-06 57.0 33 69.7
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.1e-06 57.0 95 40.0
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 1.4e-06 56.6 113 33.6
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 2.3e-06 55.8 94 39.4
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 2.3e-06 55.8 94 39.4
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 2.3e-06 55.8 51 52.9
Duzib177G0824 Durio zibethinus HOM05D002144 ORTHO05D002170 3.1e-06 55.5 72 47.2
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 4.0e-06 55.1 113 30.1
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 5.2e-06 54.7 85 40.0
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 5.2e-06 54.7 116 34.5
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 6.8e-06 54.3 52 46.2
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 6.8e-06 54.3 52 46.2
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 6.8e-06 54.3 72 38.9
MD12G1212000 Malus domestica HOM05D002144 ORTHO05D002170 8.9e-06 53.9 72 41.7


User provided reference genes

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