Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1798.5 1026 100.0
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1703.3 1009 93.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1532.3 1026 86.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1506.1 1006 83.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1474.9 1006 81.2
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1184.5 1058 66.3
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1164.8 1070 64.1
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1147.5 1062 66.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1145.2 1070 63.9
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1127.9 1046 63.1
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1125.2 1021 64.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1125.2 1021 64.3
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1124.0 1024 65.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1120.5 1036 64.8
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1115.9 1037 65.2
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1112.4 1033 63.3
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1112.1 1076 61.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1111.3 1043 65.1
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1108.6 1050 63.6
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1107.4 1029 64.7
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1011 65.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1043 64.0
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1090.9 1039 61.3
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1089.7 1027 62.3
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1088.2 1099 59.9
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1062 62.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1077.8 1027 62.7
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 1033 62.9
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1075.1 1198 58.4
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.4e-311 1073.2 1031 62.7
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 3.1e-310 1068.5 985 63.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 5.3e-310 1067.8 1011 60.3
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.4e-309 1065.1 1032 62.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.2e-308 1062.4 1018 60.8
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 3.8e-308 1061.6 1036 61.6
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 3.2e-307 1058.5 1067 61.7
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 3.6e-306 1055.0 1045 59.8
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.3e-305 1052.4 1028 60.1
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 3.9e-305 1051.6 1026 59.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 8.8e-305 1050.4 1032 64.1
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-304 1050.0 1036 61.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 1026 60.3
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 5.7e-304 1047.7 1049 61.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.1e-302 1042.0 1029 60.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.1e-302 1041.6 1072 58.5
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 2.6e-301 1038.9 1065 59.8
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.7e-300 1036.2 997 63.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 2.2e-300 1035.8 1070 61.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.0e-300 1034.6 1023 60.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.1e-299 1033.5 1058 59.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.5e-299 1032.3 1064 60.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.5e-299 1032.3 1049 59.8
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 9.4e-299 1030.4 1065 59.5
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1010 62.5
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 8.8e-297 1023.8 1032 58.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.1e-296 1023.5 1032 58.9
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.4e-296 1021.5 1021 62.2
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 7.0e-294 1014.2 1029 60.5
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.7e-292 1009.6 1021 60.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.7e-292 1009.6 919 62.9
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 5.0e-292 1008.1 1088 56.6
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 1043 59.7
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.5e-291 1005.7 1048 58.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 7.2e-291 1004.2 1019 59.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.2e-290 1003.4 1042 59.6
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 6.1e-290 1001.1 1025 59.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.4e-289 1000.0 917 63.8
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 8.8e-289 997.3 1031 57.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.2e-288 996.9 1064 58.6
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 7.5e-288 994.2 1024 58.6
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.8e-287 992.3 1032 60.8
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.4e-286 989.9 916 63.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.4e-286 989.2 989 61.8
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 5.3e-286 988.0 998 61.3
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 7.0e-286 987.6 1023 58.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.3e-284 983.4 866 65.0
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 8.5e-284 980.7 994 61.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.9e-283 979.5 1026 59.4
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.5e-283 978.0 1021 56.3
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.0e-281 973.8 1035 53.7
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.7e-279 966.5 1004 60.5
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 4.1e-278 961.8 1023 59.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 2.5e-275 952.6 1032 57.2
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 8.9e-273 944.1 861 62.5
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 6.3e-271 937.9 995 59.2
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 9.2e-270 934.1 1036 57.8
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 6.6e-268 927.9 1022 54.9
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.2e-266 923.7 1010 56.5
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.6e-266 922.2 1052 53.2
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.6e-264 916.0 1033 53.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.2e-254 882.5 839 59.8
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.6e-253 880.2 1019 51.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.8e-250 869.4 894 56.9
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.9e-246 856.7 1009 54.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.1e-246 854.7 853 59.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 9.2e-246 854.4 1051 52.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.2e-240 837.4 1035 50.0
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.0e-236 822.8 837 58.7
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.9e-235 820.1 1061 49.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.3e-220 770.8 707 64.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 8.7e-212 741.5 580 70.0
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.4e-208 729.6 616 65.6
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.1e-201 706.4 1023 46.5
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.3e-201 705.7 609 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 5.3e-193 679.1 920 45.4
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 3.9e-188 662.9 1176 39.5
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.7e-186 656.4 1008 44.2
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.2e-184 651.4 1039 42.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 7.5e-171 605.5 545 63.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 8.3e-170 602.1 497 68.8
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.3e-167 594.7 882 46.4
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.1e-161 575.1 747 53.1
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.2e-155 555.1 591 57.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.5e-155 552.4 919 39.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.0e-149 532.3 624 50.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.6e-141 508.1 847 39.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 9.3e-121 439.1 361 66.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.7e-103 379.8 1091 32.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.9e-100 369.8 352 59.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.4e-84 318.2 390 50.8
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 9.0e-84 316.2 751 36.5
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 2.2e-82 311.6 624 39.9
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 7.4e-70 270.0 581 38.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 3.8e-66 257.7 946 29.4
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-58 232.6 202 64.4
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 5.7e-54 217.2 205 61.5
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.8e-52 212.2 227 57.7
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.2e-50 205.3 262 52.3
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.3e-47 195.3 179 59.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 2.8e-32 145.2 173 51.4
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.4e-31 142.9 160 53.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.4e-28 132.1 86 77.9
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 9.2e-28 130.2 228 43.0
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 2.7e-27 128.6 132 56.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.9e-25 122.5 200 52.0
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.0e-22 112.5 220 42.3
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 3.2e-20 105.1 84 60.7
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 7.1e-20 104.0 58 82.8
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.2e-19 103.2 51 96.1
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.3e-17 95.1 99 51.5
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.6e-08 65.1 118 37.3
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 64.4
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.1e-07 63.5 37 81.1
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.4e-07 63.2 45 62.2


User provided reference genes

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