Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 1.1e-122 443.4 232 100.0
CsaV3_7G034060 Cucumis sativus L. HOM05D003357 ORTHO05D003779 9.1e-117 423.7 232 94.4
Sed0022278 Sechium edule HOM05D003357 ORTHO05D003779 9.2e-85 317.4 219 73.1
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.1e-44 183.3 195 47.7
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 1.7e-38 163.7 242 42.6
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 4.9e-38 162.2 231 39.8
Prupe.3G032500 Prunus persica HOM05D003357 ORTHO05D003779 4.6e-36 155.6 199 43.2
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 3.9e-35 152.5 227 39.2
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 3.9e-35 152.5 227 39.2
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 6.2e-33 145.2 242 38.4
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 7.6e-31 138.3 188 41.5
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.0e-30 137.9 228 38.2
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 2.2e-30 136.7 242 36.8
MD17G1152300 Malus domestica HOM05D003357 ORTHO05D003779 2.9e-30 136.3 201 40.8
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 2.5e-29 133.3 181 42.5
Duzib235G0273 Durio zibethinus HOM05D003357 ORTHO05D003779 1.6e-28 130.6 217 37.8
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 3.0e-27 126.3 191 41.9
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.3e-26 122.5 234 32.9
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 4.3e-26 122.5 191 39.3
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 9.7e-26 121.3 217 35.5
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 2.8e-25 119.8 236 31.8
Ciclev10026388m.g Citrus clementina HOM05D003357 ORTHO05D003779 3.7e-25 119.4 231 33.8
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 6.3e-25 118.6 217 35.0
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.1e-24 117.9 235 31.1
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 9.0e-24 114.8 217 34.6
Lsat_1_v5_gn_0_41661 Lactuca sativa HOM05D003357 ORTHO05D003779 2.6e-23 113.2 178 41.0
DCAR_016095 Daucus carota HOM05D003357 ORTHO05D003779 2.5e-21 106.7 175 38.3
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 5.5e-21 105.5 233 33.9
COL.COLO4_30848 Corchorus olitorius HOM05D003357 ORTHO05D003779 3.0e-19 99.8 157 39.5
HanXRQChr15g0497241 Helianthus annuus HOM05D003357 ORTHO05D003779 3.9e-19 99.4 146 40.4
Nitab4.5_0003987g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 5.7e-18 95.5 187 30.5
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.3e-17 94.4 186 31.2
CAN.G790.70 Capsicum annuum HOM05D003357 ORTHO05D003779 1.8e-16 90.5 174 36.2
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 4.1e-16 89.4 185 31.4
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 2.0e-15 87.0 170 33.5
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.3e-14 84.3 184 33.7
Oeu013442.1 Olea europaea HOM05D000643 ORTHO05D000663 1.7e-14 84.0 179 29.6
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 5.0e-14 82.4 174 33.9
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 8.5e-14 81.6 153 34.0
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.4e-13 80.9 201 32.3
Nitab4.5_0015287g0010 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.2e-13 79.7 165 29.7
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 7.2e-13 78.6 153 34.6
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.1e-12 77.0 180 31.1
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 4.7e-12 75.9 156 31.4
SGA_v2.0_scaffold71G23911 Striga asiatica HOM05D003357 ORTHO05D003779 7.9e-12 75.1 186 28.5
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 1.8e-11 73.9 153 32.7
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 6.7e-11 72.0 153 31.4
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 6.7e-11 72.0 166 30.7
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 8.8e-11 71.6 158 31.6
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 1.1e-10 71.2 167 29.3
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.5e-10 70.9 182 29.7
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 2.0e-10 70.5 164 29.3
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.3e-10 69.7 156 33.3
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 4.4e-10 69.3 156 32.7
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 4.4e-10 69.3 156 32.7
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 4.4e-10 69.3 169 27.8
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 5.7e-10 68.9 161 30.4
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 5.7e-10 68.9 158 31.6
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 7.4e-10 68.6 163 31.9
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 7.4e-10 68.6 152 31.6
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 9.7e-10 68.2 155 31.0
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 9.7e-10 68.2 155 31.0
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 9.7e-10 68.2 155 31.0
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 9.7e-10 68.2 168 31.5
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 1.3e-09 67.8 152 31.6
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 1.7e-09 67.4 194 30.4
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 1.7e-09 67.4 155 32.3
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 1.7e-09 67.4 163 30.1
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.2e-09 67.0 164 29.9
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 2.2e-09 67.0 155 31.0
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.2e-09 67.0 155 31.0
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.2e-09 67.0 155 31.0
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.2e-09 67.0 155 31.0
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 2.2e-09 67.0 162 32.1
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 2.8e-09 66.6 135 32.6
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 3.7e-09 66.2 169 29.6
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 3.7e-09 66.2 133 34.6
Zm00001eb099990 Zea mays HOM05D003357 ORTHO05D003779 3.7e-09 66.2 199 27.1
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 4.8e-09 65.9 170 27.1
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 4.8e-09 65.9 139 36.7
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 4.8e-09 65.9 150 32.0
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 6.3e-09 65.5 176 29.5
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 6.3e-09 65.5 162 30.9
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 6.3e-09 65.5 151 32.5
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 6.3e-09 65.5 151 32.5
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 6.3e-09 65.5 151 32.5
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 6.3e-09 65.5 156 31.4
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 6.3e-09 65.5 161 30.4
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 6.3e-09 65.5 165 30.3
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 8.2e-09 65.1 161 29.8
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.1e-08 64.7 180 29.4
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 1.1e-08 64.7 167 29.9
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 1.1e-08 64.7 132 35.6
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 1.1e-08 64.7 127 34.6
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 1.4e-08 64.3 148 31.8
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 1.4e-08 64.3 174 29.3
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.4e-08 64.3 180 31.1
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.4e-08 64.3 180 29.4
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.4e-08 64.3 167 28.7
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 1.4e-08 64.3 162 30.9
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 1.8e-08 63.9 164 30.5
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 1.8e-08 63.9 127 34.6
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.4e-08 63.5 165 29.1
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 2.4e-08 63.5 172 31.4
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 2.4e-08 63.5 170 29.4
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 2.4e-08 63.5 136 32.4
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 3.1e-08 63.2 154 31.8
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 3.1e-08 63.2 182 30.8
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 3.1e-08 63.2 166 30.1
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 4.1e-08 62.8 155 31.0
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.3e-08 62.4 170 29.4
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 5.3e-08 62.4 167 28.1
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.3e-08 62.4 165 29.1
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 5.3e-08 62.4 165 29.1
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 5.3e-08 62.4 161 28.6
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 5.3e-08 62.4 136 34.6
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 7.0e-08 62.0 135 34.1
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 7.0e-08 62.0 159 30.2
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.2e-07 61.2 166 30.1
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.2e-07 61.2 151 30.5
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 2.0e-07 60.5 152 27.0
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 2.0e-07 60.5 122 33.6
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 2.6e-07 60.1 152 27.0
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 2.6e-07 60.1 155 29.7
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 2.6e-07 60.1 163 28.8
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 2.6e-07 60.1 165 27.9
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 2.6e-07 60.1 149 29.5
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 3.4e-07 59.7 139 32.4
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 3.4e-07 59.7 139 32.4
Ah.01g014790 Amaranthus hybridus HOM05D000973 ORTHO05D000652 4.5e-07 59.3 167 27.5
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 4.5e-07 59.3 173 28.3
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 5.9e-07 58.9 170 27.6
Duzib150G0577 Durio zibethinus HOM05D000973 ORTHO05D000652 7.7e-07 58.5 175 30.9
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 7.7e-07 58.5 151 33.1
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 1.0e-06 58.2 165 27.9
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 1.0e-06 58.2 169 28.4
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.3e-06 57.8 154 29.2
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 2.2e-06 57.0 148 32.4
AUR62025118 Chenopodium quinoa HOM05D000973 ORTHO05D000652 2.9e-06 56.6 219 26.0
ClCG03G014140 Citrullus lanatus HOM05D000973 ORTHO05D000652 3.8e-06 56.2 195 28.7
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 3.8e-06 56.2 130 30.0
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 5.0e-06 55.8 146 30.8
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 5.0e-06 55.8 106 34.0
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 6.5e-06 55.5 143 31.5
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 6.5e-06 55.5 156 28.2
THA.LOC104804513 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 6.5e-06 55.5 159 28.9
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 8.5e-06 55.1 137 30.7
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 8.5e-06 55.1 92 34.8


User provided reference genes

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