Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1681.8 821 100.0
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1438.3 768 92.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 0.0e+00 1389.0 768 89.1
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1250.0 769 80.8
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.2e-290 1002.3 774 65.5
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 2.2e-290 1002.3 773 66.0
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.2e-288 996.5 774 65.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.2e-288 996.5 773 65.7
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.0e-287 991.9 774 65.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 7.6e-283 977.2 769 64.8
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.7e-282 976.1 784 63.3
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.2e-282 975.7 776 64.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.1e-281 973.4 775 64.8
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.4e-281 973.0 783 62.8
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.4e-281 973.0 783 62.8
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 4.1e-281 971.5 774 64.6
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.2e-281 970.3 783 62.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.9e-279 964.9 784 62.8
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.8e-275 951.0 765 63.4
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.9e-274 948.7 762 63.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.4e-273 945.7 789 63.1
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.1e-271 937.9 769 62.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.3e-269 933.3 772 61.9
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 6.2e-269 931.0 771 61.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.5e-267 926.4 782 60.4
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 2.6e-267 925.6 761 61.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 7.6e-267 924.1 765 61.7
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.9e-267 923.7 783 59.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.8e-266 921.8 765 61.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 4.9e-266 921.4 816 58.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 4.9e-266 921.4 789 60.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.9e-265 919.5 765 60.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.6e-264 916.4 758 61.3
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 6.0e-264 914.4 758 61.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 7.3e-262 907.5 820 58.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.3e-261 906.7 780 60.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 6.2e-261 904.4 765 60.5
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.4e-260 903.3 754 61.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.8e-260 902.9 767 60.5
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 6.9e-260 901.0 763 60.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.0e-259 899.4 780 60.3
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 9.9e-259 897.1 772 59.7
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 2.2e-258 896.0 766 60.8
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.4e-258 894.0 753 61.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 4.2e-257 891.7 767 60.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.7e-256 889.0 757 61.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.5e-256 888.6 768 60.8
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 6.0e-256 887.9 768 60.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 6.0e-256 887.9 772 59.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-255 886.7 768 59.6
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.8e-255 886.3 767 60.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.8e-255 886.3 767 60.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 6.7e-255 884.4 749 58.6
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 9.6e-254 880.6 766 59.4
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 9.6e-254 880.6 767 59.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.8e-253 879.0 762 60.6
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.8e-253 879.0 765 59.6
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.8e-253 879.0 767 59.5
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 6.2e-253 877.9 770 59.4
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.1e-253 877.5 762 59.6
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-252 877.1 763 59.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.1e-252 877.1 769 59.4
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.4e-252 875.9 763 59.1
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-252 875.9 770 58.8
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 5.3e-252 874.8 755 60.4
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.3e-252 874.8 770 58.8
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 6.9e-252 874.4 766 59.0
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.2e-251 873.6 762 59.6
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-251 873.6 770 59.0
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.6e-251 870.9 767 60.4
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.9e-250 869.0 762 60.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.9e-249 866.3 766 59.0
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 5.5e-249 864.8 769 59.0
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.2e-248 863.6 762 59.4
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 3.5e-248 862.1 762 59.4
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.3e-247 860.1 751 58.6
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.7e-247 857.4 767 58.7
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 4.3e-246 855.1 762 58.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 7.4e-246 854.4 763 58.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.1e-245 852.8 785 57.2
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-243 847.0 768 58.3
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.4e-243 845.5 778 56.9
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 4.5e-243 845.1 780 56.7
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 7.6e-243 844.3 774 56.8
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-241 840.5 761 57.8
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.2e-241 838.6 761 57.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.1e-240 836.3 783 56.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-238 830.1 761 57.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.6e-235 819.3 786 55.7
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.7e-235 817.8 746 58.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-234 816.6 767 56.6
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 6.5e-234 814.7 763 54.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 6.5e-234 814.7 768 55.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 6.5e-234 814.7 763 54.4
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.1e-233 813.9 758 56.9
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.4e-233 813.5 775 55.5
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.9e-233 813.1 763 54.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.9e-233 813.1 773 55.9
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.9e-233 813.1 773 55.9
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 2.5e-233 812.8 770 55.7
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 4.2e-233 812.0 775 53.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 7.2e-233 811.2 762 54.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 9.4e-233 810.8 776 53.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 7.9e-232 807.7 742 55.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 7.9e-232 807.7 773 56.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.8e-231 806.6 745 57.6
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 5.1e-231 805.1 777 53.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 5.1e-231 805.1 772 55.8
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 8.8e-231 804.3 743 56.1
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.8e-231 804.3 785 55.0
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.3e-230 802.4 759 55.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.3e-230 802.4 770 55.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.3e-230 802.0 763 53.9
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.7e-230 800.8 763 56.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.2e-229 799.7 779 53.0
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.8e-229 799.3 767 56.5
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.5e-225 786.2 761 54.8
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.3e-223 779.6 773 52.4
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.8e-220 770.0 719 57.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 9.1e-220 767.7 734 57.6
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.2e-219 767.3 738 52.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.5e-219 765.8 781 53.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 9.4e-217 757.7 759 52.0
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 3.6e-216 755.7 749 54.2
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.7e-210 736.9 732 54.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.2e-209 732.3 760 50.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.2e-209 731.5 778 53.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.3e-207 726.5 777 51.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.7e-205 719.2 762 51.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 9.1e-204 714.5 773 50.3
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 3.5e-203 712.6 732 52.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.5e-201 707.2 762 51.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.0e-199 701.0 849 48.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-195 686.4 735 52.0
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 5.0e-194 682.2 735 51.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.5e-185 654.1 719 50.5
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.1e-177 627.9 709 50.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 2.1e-171 607.1 634 52.1
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 4.2e-156 556.2 765 42.1
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.4e-149 532.3 743 40.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.3e-146 524.6 760 40.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 6.2e-144 515.8 409 65.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 9.9e-142 508.4 758 40.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.8e-141 506.5 794 38.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.1e-137 495.0 765 40.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.8e-136 490.3 448 56.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.0e-134 484.2 746 38.9
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.0e-130 470.3 404 60.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.0e-130 470.3 404 60.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.8e-114 417.9 459 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.9e-114 416.8 593 40.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-111 408.7 403 53.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.8e-101 373.6 438 43.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 7.2e-92 342.8 262 63.4
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.1e-79 300.8 256 59.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.8e-74 285.0 747 29.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.2e-66 256.9 265 49.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.4e-55 221.5 264 47.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.3e-50 204.9 186 58.1
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.4e-48 196.8 763 25.3
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.3e-44 184.5 153 60.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.3e-39 166.4 83 86.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-33 148.7 150 55.3
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.1e-28 132.9 76 78.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.2e-19 100.5 159 35.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.0e-18 97.8 129 38.0
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.7e-08 65.9 33 84.8
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.8e-08 64.7 34 79.4
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.1e-06 58.9 64 50.0
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 4.6e-06 57.8 74 44.6


User provided reference genes

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