Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.4e-105 386.3 198 100.0
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.1e-97 360.1 193 96.4
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.6e-93 344.7 193 91.2
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 4.3e-83 311.6 195 82.6
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 7.9e-77 290.8 193 75.6
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.1e-75 287.0 193 72.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 2.5e-75 285.8 193 74.6
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.3e-74 283.5 193 71.5
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.6e-74 283.1 197 70.6
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 8.1e-74 280.8 193 71.5
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.1e-73 280.4 193 72.0
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-73 280.0 193 73.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.8e-73 279.6 193 71.5
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.8e-73 279.6 193 71.5
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.4e-73 279.3 193 69.9
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.1e-73 278.9 193 71.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.1e-73 278.9 195 70.8
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 3.1e-73 278.9 193 68.9
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.0e-73 278.5 196 70.4
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.0e-73 278.5 193 73.1
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 6.9e-73 277.7 193 70.5
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 9.0e-73 277.3 193 71.0
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.5e-72 276.6 193 69.4
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.0e-72 276.2 197 69.0
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.0e-72 276.2 197 69.0
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 4.5e-72 275.0 197 69.5
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 7.6e-72 274.2 194 70.6
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 9.9e-72 273.9 193 71.0
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.3e-71 273.5 193 71.0
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.7e-71 273.1 193 71.0
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 6.4e-71 271.2 193 69.9
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.4e-71 270.8 200 68.5
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 8.4e-71 270.8 193 69.9
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.1e-70 270.4 193 68.9
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.1e-70 270.4 193 67.9
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 1.1e-70 270.4 193 67.9
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-70 270.4 193 71.0
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.1e-70 270.4 193 71.0
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.4e-70 270.0 193 67.9
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.4e-70 270.0 193 68.9
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.9e-70 269.6 193 69.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.9e-70 269.6 193 67.9
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 2.4e-70 269.2 193 68.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 2.4e-70 269.2 193 67.4
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.4e-70 269.2 198 67.2
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 3.2e-70 268.9 193 67.4
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.2e-70 268.9 193 67.4
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 3.2e-70 268.9 193 67.9
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.2e-70 268.9 193 65.8
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 5.5e-70 268.1 193 66.3
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 7.1e-70 267.7 194 67.0
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.1e-70 267.7 191 69.1
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 9.3e-70 267.3 193 67.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 9.3e-70 267.3 193 67.9
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.6e-69 266.5 193 67.9
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.6e-69 266.5 193 67.4
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 2.7e-69 265.8 197 68.0
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.7e-69 265.8 191 68.6
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.5e-69 265.4 193 67.4
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.5e-69 265.4 193 68.9
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.6e-69 265.0 193 67.4
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 4.6e-69 265.0 195 67.7
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 4.6e-69 265.0 193 66.8
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 6.0e-69 264.6 193 66.8
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.0e-68 263.8 193 66.8
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.0e-68 263.8 193 66.3
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 2.3e-68 262.7 193 65.8
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-68 262.3 193 66.3
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 3.9e-68 261.9 193 66.3
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 3.9e-68 261.9 193 64.8
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 5.1e-68 261.5 197 65.0
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 5.1e-68 261.5 193 66.8
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 6.7e-68 261.2 197 65.5
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 8.7e-68 260.8 194 68.0
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 8.7e-68 260.8 192 68.2
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-67 260.4 193 68.9
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 1.5e-67 260.0 195 65.6
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.5e-67 260.0 194 66.5
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 2.5e-67 259.2 193 67.9
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 2.5e-67 259.2 194 67.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 3.3e-67 258.8 193 65.8
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 4.3e-67 258.5 200 65.5
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 5.6e-67 258.1 194 64.4
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.6e-66 256.5 193 64.2
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 2.1e-66 256.1 197 63.5
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.8e-66 255.8 195 63.6
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 4.8e-66 255.0 194 66.0
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 1.1e-65 253.8 204 62.7
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.4e-65 253.4 194 64.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.8e-65 253.1 196 64.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 3.1e-65 252.3 191 64.9
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 5.3e-65 251.5 196 63.8
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 4.5e-64 248.4 201 63.2
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 5.8e-64 248.1 196 62.2
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.0e-63 247.3 194 61.9
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.3e-63 246.9 193 64.8
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.3e-63 246.9 193 63.7
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.3e-63 246.9 194 63.4
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.7e-63 246.5 193 61.1
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.9e-63 245.7 193 60.1
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.9e-63 245.7 193 62.7
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 4.9e-63 245.0 224 59.4
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.6e-61 238.4 216 57.9
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 6.0e-61 238.0 195 62.1
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-60 236.5 195 61.5
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 3.0e-60 235.7 196 61.2
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 6.7e-60 234.6 197 59.4
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 6.7e-60 234.6 170 70.6
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 3.7e-58 228.8 194 60.3
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 4.1e-57 225.3 201 58.2
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-56 223.4 215 55.3
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.6e-56 221.1 212 56.6
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.1e-54 217.2 194 55.2
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.4e-54 216.9 204 54.4
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.2e-54 215.7 193 56.0
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.0e-52 210.7 194 56.7
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.0e-52 210.7 134 71.6
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.0e-52 210.7 170 64.1
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.1e-52 208.4 193 57.0
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 4.3e-51 205.3 118 80.5
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 5.7e-51 204.9 118 78.8
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 7.4e-51 204.5 151 68.9
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 9.4e-46 187.6 119 71.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.6e-40 169.5 121 68.6
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 6.5e-39 164.9 194 46.4
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.3e-36 156.4 126 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 6.7e-36 154.8 134 50.7
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 9.1e-33 144.4 97 69.1
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 9.1e-33 144.4 96 70.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 3.5e-32 142.5 122 60.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.0e-31 141.0 198 46.0
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 2.2e-31 139.8 126 58.7
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 8.0e-29 131.3 202 37.6
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 4.8e-26 122.1 171 38.0
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 9.4e-22 107.8 88 60.2
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 2.6e-19 99.8 103 52.4
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.4e-19 99.4 130 43.8
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.4e-19 99.4 139 42.4
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.4e-19 99.0 93 55.9
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 7.5e-19 98.2 103 48.5
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 3.8e-15 85.9 197 26.9
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.6e-13 80.5 76 56.6
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 5.7e-11 72.0 125 39.2
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.4e-09 67.4 47 72.3
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.2e-08 64.3 44 63.6
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.2e-08 64.3 56 53.6
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 2.0e-08 63.5 81 44.4
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.3e-07 60.8 169 29.0
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-06 57.4 65 52.3
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-06 57.0 61 57.4
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 2.5e-06 56.6 48 62.5
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 3.3e-06 56.2 45 64.4
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 3.3e-06 56.2 33 81.8
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 5.6e-06 55.5 30 86.7
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.6e-06 55.5 30 86.7
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.6e-06 55.5 30 86.7
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.6e-06 55.5 30 86.7
TPR.G13375 Trifolium pratense HOM05D000083 ORTHO05D002968 5.6e-06 55.5 25 80.0


User provided reference genes

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