Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.4e-178 629.4 300 100.0
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 1.6e-161 572.8 326 85.3
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 2.4e-138 495.7 341 73.0
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 2.8e-102 375.9 304 65.5
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 7.2e-98 361.3 323 58.8
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 3.9e-96 355.5 337 55.8
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 1.1e-95 354.0 338 58.0
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 7.4e-95 351.3 294 60.9
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 7.4e-95 351.3 325 57.5
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 2.2e-94 349.7 323 60.1
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 1.1e-93 347.4 326 57.4
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 3.4e-92 342.4 309 56.3
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 2.5e-90 336.3 313 57.8
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 3.2e-90 335.9 250 64.4
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 4.2e-90 335.5 322 56.2
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 7.2e-90 334.7 364 51.1
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 1.6e-89 333.6 292 57.2
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 2.7e-89 332.8 281 59.8
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 6.1e-89 331.6 305 56.1
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 1.4e-88 330.5 254 62.6
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 1.8e-88 330.1 270 62.6
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 8.8e-88 327.8 305 55.7
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 1.1e-87 327.4 259 61.4
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 2.0e-87 326.6 315 55.9
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 3.3e-87 325.9 262 62.6
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 3.3e-87 325.9 248 63.7
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 5.7e-87 325.1 250 63.6
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 1.3e-86 323.9 305 56.7
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 2.8e-86 322.8 249 63.5
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 3.7e-86 322.4 251 61.8
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 3.7e-86 322.4 248 65.3
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 4.8e-86 322.0 250 60.4
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 4.8e-86 322.0 250 63.2
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 7.0e-85 318.2 250 60.8
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.6e-84 316.2 251 62.5
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 2.6e-84 316.2 265 58.9
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.9e-83 312.8 329 48.3
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.9e-83 312.8 262 57.6
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 6.5e-83 311.6 264 57.6
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.1e-82 310.8 266 58.6
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 1.5e-82 310.5 309 53.1
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 1.5e-82 310.5 251 58.6
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.9e-82 310.1 251 58.6
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 3.2e-82 309.3 265 58.1
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 5.5e-82 308.5 251 61.4
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 9.4e-82 307.8 264 58.0
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 9.4e-82 307.8 264 57.6
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 1.2e-81 307.4 248 61.7
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.7e-81 306.2 249 58.6
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 3.6e-81 305.8 251 58.2
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.8e-80 303.5 264 56.8
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 3.0e-80 302.8 268 57.5
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 3.0e-80 302.8 268 57.5
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 5.2e-80 302.0 252 58.3
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 1.5e-79 300.4 262 56.5
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 1.5e-79 300.4 316 48.4
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 4.4e-79 298.9 249 55.8
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 2.8e-78 296.2 268 55.2
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 6.3e-78 295.0 259 58.7
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 6.3e-78 295.0 267 56.2
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 6.3e-78 295.0 264 56.8
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 6.3e-78 295.0 310 52.6
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 9.1e-77 291.2 308 51.6
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 1.6e-76 290.4 275 51.6
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 2.0e-76 290.0 251 57.8
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.7e-76 289.7 233 59.7
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 4.5e-76 288.9 257 54.9
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 5.9e-76 288.5 233 59.2
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 1.7e-75 287.0 244 57.8
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 8.5e-75 284.6 233 58.4
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.5e-74 283.9 289 50.5
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 1.5e-74 283.9 252 54.0
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 9.4e-74 281.2 294 53.1
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-73 280.4 248 56.9
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 8.3e-70 268.1 230 57.0
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 4.1e-69 265.8 246 55.7
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 2.9e-67 259.6 241 51.5
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.9e-66 256.9 238 54.2
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 2.5e-66 256.5 246 52.4
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 4.7e-65 252.3 201 60.7
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 1.8e-61 240.4 281 47.3
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 5.2e-56 222.2 201 55.2
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 2.9e-54 216.5 207 53.1
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 9.2e-53 211.5 121 78.5
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 8.6e-51 204.9 248 46.4
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 1.3e-46 191.0 247 42.1
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.2e-44 184.5 179 49.7
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 1.1e-42 177.9 255 39.6
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 5.2e-40 169.1 103 68.0
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 9.2e-37 158.3 102 65.7
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 3.5e-36 156.4 193 48.7
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 3.3e-34 149.8 144 54.9
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.3e-34 149.8 263 34.2
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 8.9e-32 141.7 81 70.4
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 6.4e-30 135.6 80 76.2
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 9.6e-26 121.7 106 55.7
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.5e-23 114.4 83 60.2
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 4.9e-22 109.4 295 27.1
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 1.2e-20 104.8 67 65.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 6.2e-17 92.4 61 63.9
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 6.2e-17 92.4 61 63.9
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 6.4e-14 82.4 105 49.5
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 4.6e-12 76.3 52 73.1
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 4.6e-12 76.3 52 73.1
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-11 74.7 55 58.2
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-11 74.7 55 58.2
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 6.7e-11 72.4 63 52.4
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 8.7e-11 72.0 61 50.8
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.5e-10 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-08 65.1 43 58.1
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 2.0e-07 60.8 32 78.1
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 8.4e-06 55.5 42 54.8


User provided reference genes

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