Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.6e-32 142.1 69 100.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.7e-31 138.7 69 95.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.3e-30 134.0 69 91.3
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.6e-24 115.5 69 78.3
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 4.6e-24 114.0 68 80.9
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.3e-23 112.5 67 77.6
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.3e-23 112.5 67 77.6
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.3e-23 112.5 67 77.6
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.3e-23 111.7 65 80.0
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.9e-23 110.9 66 77.3
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.9e-23 110.9 68 77.9
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.6e-23 109.8 68 76.5
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.5e-22 109.0 67 76.1
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 1.5e-22 109.0 67 74.6
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.9e-22 108.6 67 73.1
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.5e-22 108.2 64 78.1
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.3e-22 107.5 68 75.0
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 7.3e-22 106.7 67 73.1
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 7.3e-22 106.7 67 74.6
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 9.6e-22 106.3 53 88.7
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.6e-21 105.5 64 76.6
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.1e-21 105.1 67 71.6
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 2.8e-21 104.8 66 74.2
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.8e-21 104.8 66 74.2
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.6e-21 104.4 65 75.4
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.7e-21 104.0 65 73.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-21 104.0 67 73.1
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-21 104.0 67 73.1
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 4.7e-21 104.0 64 75.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.7e-21 104.0 66 72.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 6.2e-21 103.6 64 75.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 8.1e-21 103.2 64 75.0
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 8.1e-21 103.2 64 75.0
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.1e-20 102.8 64 75.0
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.8e-20 102.1 64 73.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.4e-20 101.7 71 70.4
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.4e-20 101.7 64 73.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 4.0e-20 100.9 64 71.9
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 4.0e-20 100.9 63 74.6
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 5.2e-20 100.5 52 86.5
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 5.2e-20 100.5 64 70.3
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 6.9e-20 100.1 64 73.4
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 8.9e-20 99.8 64 73.4
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 8.9e-20 99.8 53 83.0
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-19 99.4 64 70.3
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-19 99.4 64 70.3
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.2e-19 99.4 64 70.3
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.2e-19 99.4 64 70.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.5e-19 99.0 59 74.6
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.0e-19 98.6 64 70.3
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-19 98.6 64 70.3
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-19 98.6 64 70.3
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-19 98.6 68 67.6
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-19 98.6 68 67.6
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-19 98.6 68 67.6
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.0e-19 98.6 64 67.2
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.0e-19 98.6 64 68.8
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.6e-19 98.2 63 69.8
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 3.4e-19 97.8 64 70.3
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 4.4e-19 97.4 63 69.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 4.4e-19 97.4 67 70.1
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 4.4e-19 97.4 64 67.2
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.4e-19 97.4 58 75.9
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 5.8e-19 97.1 52 82.7
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 5.8e-19 97.1 52 82.7
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 7.6e-19 96.7 52 84.6
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 7.6e-19 96.7 68 66.2
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.6e-19 96.7 67 67.2
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 7.6e-19 96.7 64 70.3
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 9.9e-19 96.3 64 70.3
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 9.9e-19 96.3 64 68.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 9.9e-19 96.3 64 70.3
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 9.9e-19 96.3 68 67.6
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.3e-18 95.9 52 82.7
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.3e-18 95.9 52 82.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.3e-18 95.9 52 82.7
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.3e-18 95.9 68 66.2
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.3e-18 95.9 61 70.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.3e-18 95.9 67 68.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.7e-18 95.5 57 75.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.7e-18 95.5 52 84.6
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-18 95.5 68 64.7
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-18 95.5 68 64.7
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.7e-18 95.5 52 80.8
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.7e-18 95.5 62 69.4
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.2e-18 95.1 91 54.9
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.8e-18 94.4 69 63.8
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.8e-18 94.4 64 68.8
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 4.9e-18 94.0 53 83.0
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 4.9e-18 94.0 85 56.5
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.9e-18 94.0 58 74.1
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 6.4e-18 93.6 53 81.1
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-17 92.8 56 75.0
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-17 92.8 56 75.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.1e-17 92.8 53 81.1
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.1e-17 92.8 57 75.4
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-17 92.4 62 67.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.4e-17 92.4 52 78.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.4e-17 91.7 64 68.8
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.2e-17 90.9 53 79.2
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 9.3e-17 89.7 52 76.9
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.2e-16 89.4 59 66.1
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.6e-16 89.0 57 68.4
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.6e-16 89.0 63 65.1
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.6e-16 89.0 63 65.1
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 4.6e-16 87.4 57 66.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 4.6e-16 87.4 57 66.7
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 6.0e-16 87.0 59 67.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.0e-15 84.7 63 63.5
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.1e-14 82.8 44 86.4
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-14 82.4 64 62.5
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.6e-14 80.5 38 92.1
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.1e-13 78.6 39 87.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 6.2e-13 77.0 40 80.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.1e-13 76.6 47 70.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 2.4e-12 75.1 39 84.6
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 6.9e-12 73.6 52 65.4
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.5e-11 72.4 39 82.1
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-11 72.0 39 79.5
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 5.8e-11 70.5 54 59.3
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.8e-11 70.5 39 76.9
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.3e-10 69.3 51 58.8
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.1e-09 66.2 39 76.9
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 4.2e-09 64.3 38 73.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 4.2e-09 64.3 38 73.7
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 9.3e-09 63.2 45 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 2.7e-08 61.6 49 55.1
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.7e-08 61.6 64 53.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.8e-07 58.9 55 49.1
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 5.1e-07 57.4 73 41.1
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 8.7e-07 56.6 36 63.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 8.7e-07 56.6 72 37.5


User provided reference genes

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