Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.6e-80 302.8 156 100.0
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 2.8e-77 292.0 156 96.8
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 1.7e-74 282.7 156 92.9
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 6.4e-74 280.8 156 92.9
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 6.9e-68 260.8 151 84.8
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 6.9e-68 260.8 151 84.1
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.5e-67 259.6 151 83.4
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.7e-66 256.1 151 84.1
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 1.1e-65 253.4 151 84.1
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.1e-65 253.4 150 84.7
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 3.2e-65 251.9 151 82.1
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 6.0e-64 247.7 151 79.5
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 7.8e-64 247.3 151 81.5
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 3.9e-63 245.0 151 79.5
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 5.1e-63 244.6 151 78.8
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 8.7e-63 243.8 151 82.8
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.9e-62 242.7 151 77.5
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 2.5e-62 242.3 143 81.1
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 3.3e-62 241.9 142 85.2
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 7.3e-62 240.7 151 78.1
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.3e-61 240.0 142 84.5
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 1.6e-61 239.6 142 81.7
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.6e-61 239.6 142 83.1
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.6e-61 239.6 151 78.1
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 2.8e-61 238.8 150 76.7
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 2.8e-61 238.8 151 77.5
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 2.8e-61 238.8 151 79.5
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 2.8e-61 238.8 151 76.8
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 3.6e-61 238.4 143 80.4
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 6.2e-61 237.7 143 82.5
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.1e-60 236.9 152 79.6
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 1.1e-60 236.9 148 79.7
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 1.8e-60 236.1 140 85.0
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 2.4e-60 235.7 142 80.3
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 3.1e-60 235.3 151 77.5
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 4.0e-60 235.0 160 76.2
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 6.9e-60 234.2 140 82.1
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 9.0e-60 233.8 142 81.0
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 9.0e-60 233.8 142 83.8
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.2e-59 233.4 143 81.1
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 4.5e-59 231.5 151 74.8
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 7.6e-59 230.7 135 82.2
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 9.9e-59 230.3 140 80.7
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 1.7e-58 229.6 151 72.8
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 2.2e-58 229.2 142 78.9
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 8.4e-58 227.3 141 81.6
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 1.4e-57 226.5 151 77.5
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.9e-57 226.1 139 81.3
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.9e-57 226.1 145 75.9
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 2.4e-57 225.7 145 75.2
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 2.4e-57 225.7 143 78.3
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 3.2e-57 225.3 151 74.8
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 9.3e-57 223.8 139 78.4
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 9.3e-57 223.8 150 76.0
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.2e-56 223.4 145 74.5
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.1e-56 222.6 143 74.8
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 3.5e-56 221.9 158 72.8
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.5e-56 221.9 145 73.8
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 1.0e-55 220.3 140 77.1
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.0e-55 220.3 151 73.5
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 1.8e-55 219.5 141 78.7
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 3.9e-55 218.4 130 83.8
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 5.1e-55 218.0 151 68.2
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.5e-54 215.7 142 78.9
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.3e-54 215.3 139 74.1
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.3e-54 215.3 139 74.1
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 3.3e-54 215.3 152 71.7
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 7.4e-54 214.2 148 73.0
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.1e-52 210.3 123 84.6
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 1.8e-52 209.5 137 75.2
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 5.3e-52 208.0 189 62.4
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 5.3e-52 208.0 142 73.9
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 3.8e-50 201.8 142 71.8
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 1.9e-49 199.5 129 74.4
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.6e-48 196.4 140 70.7
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.6e-48 196.4 141 72.3
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 2.1e-48 196.1 151 65.6
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 4.6e-48 194.9 156 64.7
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 5.1e-47 191.4 147 70.1
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 9.6e-46 187.2 110 83.6
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.2e-45 184.1 139 67.6
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 8.2e-45 184.1 110 79.1
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 7.6e-43 177.6 155 61.3
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 8.4e-42 174.1 137 62.8
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 3.2e-41 172.2 139 61.2
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 7.1e-41 171.0 108 74.1
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 9.3e-41 170.6 126 69.0
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.5e-40 168.7 126 69.0
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 6.0e-40 167.9 149 63.1
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 2.3e-39 166.0 145 56.6
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 3.9e-39 165.2 151 55.0
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 1.5e-38 163.3 142 57.0
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 2.5e-38 162.5 151 53.6
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 4.3e-38 161.8 148 54.1
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 5.7e-38 161.4 133 60.9
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 9.7e-38 160.6 139 56.8
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 9.7e-38 160.6 144 55.6
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 2.8e-37 159.1 115 69.6
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 2.8e-37 159.1 142 54.9
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 3.7e-37 158.7 139 54.0
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 4.8e-37 158.3 144 54.2
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.1e-36 157.1 142 54.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-36 157.1 142 54.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.4e-36 156.0 142 54.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 9.0e-36 154.1 147 52.4
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.6e-35 152.5 142 53.5
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 2.2e-34 149.4 77 97.4
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 1.4e-33 146.7 111 67.6
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 9.4e-33 144.1 114 62.3
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 3.3e-30 135.6 142 53.5
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.2e-29 132.9 146 56.2
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.1e-28 130.6 140 48.6
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 3.4e-27 125.6 81 75.3
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 4.1e-20 102.1 65 70.8
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.0e-15 87.4 149 42.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-14 84.0 71 54.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.8e-13 79.3 61 62.3
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 2.8e-13 79.3 152 35.5
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 5.0e-10 68.6 42 81.0
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 2.1e-08 63.2 140 32.9
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 3.3e-06 55.8 34 76.5
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 3.3e-06 55.8 34 76.5


User provided reference genes

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