Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 3.2e-256 888.6 735 100.0
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 5.8e-226 788.1 735 88.0
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.4e-200 703.7 736 84.6
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 8.3e-132 475.3 736 55.8
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 3.3e-112 410.2 630 58.9
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 3.9e-97 360.1 716 44.1
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 4.1e-86 323.6 533 43.9
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 2.3e-81 307.8 728 42.3
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.8e-79 300.8 555 40.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.1e-78 297.4 557 38.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 4.5e-77 293.5 533 42.2
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.7e-77 292.7 551 39.4
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.8e-76 290.4 539 40.8
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.4e-75 288.5 539 41.7
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 3.0e-73 280.8 521 40.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 3.0e-73 280.8 729 39.5
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.2e-71 274.6 423 46.8
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.2e-71 272.7 731 50.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.4e-70 271.2 534 39.3
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 9.1e-70 269.2 424 40.1
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 3.5e-69 267.3 523 49.7
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.0e-68 265.8 516 40.5
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 3.8e-68 263.8 672 39.6
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.5e-67 260.0 729 43.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.0e-66 256.1 519 37.2
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.4e-65 255.4 533 39.0
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.0e-65 254.2 533 36.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.1e-64 252.3 516 37.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 2.6e-64 251.1 775 41.9
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.3e-63 248.8 427 42.9
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 2.8e-63 247.7 731 51.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.4e-62 245.4 432 41.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.4e-62 244.6 535 41.3
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 7.0e-62 243.0 512 37.1
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 9.1e-62 242.7 723 45.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.5e-61 240.4 723 37.8
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 5.9e-61 240.0 731 45.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 5.9e-61 240.0 474 42.4
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.2e-59 233.8 521 35.7
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 9.4e-59 232.6 525 46.5
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 3.6e-58 230.7 677 37.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 6.1e-58 229.9 730 47.8
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.0e-57 229.2 528 37.7
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.4e-57 228.8 830 40.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 5.2e-57 226.9 767 39.8
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.0e-56 224.9 443 37.7
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.4e-56 224.2 517 36.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 5.7e-56 223.4 634 37.9
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 5.7e-56 223.4 507 33.7
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 9.7e-56 222.6 520 36.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.8e-55 221.1 376 42.0
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 3.7e-55 220.7 629 50.2
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 6.3e-55 219.9 714 44.3
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-54 219.2 484 35.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.8e-54 218.4 377 42.4
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 7.0e-54 216.5 680 45.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.7e-53 214.5 396 34.8
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.5e-53 213.8 725 52.3
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.7e-53 213.0 443 35.4
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-52 211.8 408 39.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.1e-51 209.1 422 35.1
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.1e-51 209.1 714 43.7
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.5e-51 208.8 725 51.3
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 9.4e-51 206.1 753 45.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.2e-50 205.7 368 38.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.4e-49 202.2 418 38.8
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.8e-49 201.8 586 36.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.3e-49 201.4 521 34.2
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.0e-48 198.4 515 32.2
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 3.4e-48 197.6 521 32.1
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 2.8e-47 194.5 734 43.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 7.0e-46 189.9 517 36.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.2e-45 189.1 518 37.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.2e-45 189.1 518 37.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.2e-45 189.1 518 37.8
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.6e-45 188.7 279 42.3
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.6e-45 188.7 707 38.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 2.0e-45 188.3 571 49.4
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-45 186.8 725 50.5
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.3e-44 184.9 630 47.5
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 3.8e-44 184.1 516 34.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 6.6e-44 183.3 567 45.9
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.1e-43 182.6 519 40.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.5e-43 182.2 742 52.2
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.9e-43 181.8 285 42.8
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 7.2e-43 179.9 668 46.3
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-42 179.1 686 44.6
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-42 179.1 686 44.6
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.1e-42 178.3 472 32.4
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.6e-42 177.6 429 34.3
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.7e-42 177.2 522 33.9
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 2.3e-41 174.9 322 40.7
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.0e-41 174.1 437 36.4
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 5.2e-41 173.7 433 32.8
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.6e-40 171.4 393 35.6
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.4e-40 171.0 437 35.5
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 4.4e-40 170.6 633 50.6
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.3e-39 169.1 643 41.7
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.7e-39 168.7 516 29.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 6.3e-39 166.8 506 36.0
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.4e-38 165.6 472 29.7
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.2e-38 164.5 726 43.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.2e-37 162.5 438 34.9
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.3e-36 158.3 441 35.4
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.5e-35 155.6 440 30.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 4.3e-35 154.1 437 34.8
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 7.3e-35 153.3 389 35.7
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 7.3e-35 153.3 505 29.1
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 9.5e-35 152.9 487 29.2
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.8e-34 151.4 322 31.4
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.1e-34 150.2 261 39.8
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.3e-33 148.3 341 31.1
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.0e-33 147.5 485 33.4
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.2e-32 146.0 434 32.0
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 9.8e-32 142.9 726 45.7
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.2e-31 141.7 195 45.1
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 4.1e-30 137.5 436 31.4
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.2e-29 136.0 518 30.1
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-29 134.8 432 31.2
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.5e-29 134.4 518 29.0
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 6.6e-28 130.2 519 29.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 4.3e-27 127.5 417 27.3
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 3.6e-26 124.4 433 31.9
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.0e-26 123.2 725 46.2
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.8e-25 122.1 515 34.4
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.8e-25 122.1 441 30.8
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 3.1e-25 121.3 289 33.9
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.8e-25 120.2 240 34.6
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 6.8e-25 120.2 279 33.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.6e-24 118.2 154 46.8
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 5.8e-24 117.1 510 27.1
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.1e-22 112.8 394 26.9
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.3e-20 105.9 381 24.4
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.6e-20 103.6 521 25.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 8.6e-20 103.2 388 28.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.3e-19 101.3 493 35.3
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.3e-19 101.3 114 51.8
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 5.2e-17 94.0 338 30.2
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.9e-11 75.5 285 26.0
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.6e-10 71.2 212 29.2
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.2e-09 67.4 433 19.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 8.4e-07 60.1 163 32.5
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 1.9e-06 58.9 65 56.9
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.4e-06 57.4 68 55.9


User provided reference genes

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