Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 4.3e-101 371.3 185 100.0
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 5.4e-96 354.4 202 90.1
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 8.1e-76 287.3 198 73.2
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 4.0e-75 285.0 177 83.1
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 9.9e-74 280.4 190 72.6
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 2.4e-72 275.8 198 72.2
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 3.2e-72 275.4 193 71.5
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 3.2e-72 275.4 197 70.1
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 5.4e-72 274.6 196 71.9
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 7.1e-72 274.2 198 71.7
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 9.3e-72 273.9 193 71.0
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 9.3e-72 273.9 192 69.8
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 1.2e-71 273.5 191 73.3
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 2.1e-71 272.7 196 71.4
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 2.1e-71 272.7 193 71.0
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 1.3e-70 270.0 192 71.9
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 1.8e-70 269.6 192 70.8
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 2.3e-70 269.2 193 69.9
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 6.7e-70 267.7 192 69.8
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 6.7e-70 267.7 193 70.5
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 1.9e-69 266.2 193 69.9
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 2.5e-69 265.8 192 70.3
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 1.6e-68 263.1 193 68.4
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 1.6e-68 263.1 187 71.7
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 1.6e-68 263.1 181 71.8
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 4.8e-68 261.5 188 70.2
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 4.8e-68 261.5 194 68.0
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 6.9e-67 257.7 194 69.1
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 6.9e-67 257.7 195 65.6
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 6.9e-67 257.7 193 69.4
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 6.9e-67 257.7 193 67.4
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 9.0e-67 257.3 194 68.0
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 2.0e-66 256.1 192 69.3
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 4.5e-66 255.0 184 70.1
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 5.8e-66 254.6 193 67.9
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 5.8e-66 254.6 187 69.5
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 5.8e-66 254.6 194 66.0
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 7.6e-66 254.2 193 67.9
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 1.1e-64 250.4 200 62.5
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 1.4e-64 250.0 202 63.9
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 1.4e-64 250.0 192 65.1
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 1.9e-64 249.6 195 65.1
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 1.9e-64 249.6 197 65.5
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 2.4e-64 249.2 199 63.3
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 2.4e-64 249.2 178 70.2
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 2.4e-64 249.2 190 66.3
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 3.2e-64 248.8 200 64.0
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 5.5e-64 248.1 194 66.0
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 9.3e-64 247.3 192 63.5
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 9.3e-64 247.3 192 64.6
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 3.5e-63 245.4 196 61.7
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 6.0e-63 244.6 192 63.5
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 6.0e-63 244.6 183 68.9
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 6.0e-63 244.6 194 62.9
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 6.0e-63 244.6 200 61.0
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 7.9e-63 244.2 192 63.0
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 1.3e-62 243.4 188 65.4
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 2.3e-62 242.7 192 62.5
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 2.3e-62 242.7 174 71.3
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 3.9e-62 241.9 192 63.0
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 3.3e-61 238.8 192 65.1
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 5.6e-61 238.0 200 58.5
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 7.4e-61 237.7 169 71.0
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 2.1e-60 236.1 200 59.0
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 6.2e-60 234.6 200 58.0
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 3.1e-59 232.3 137 81.0
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 5.3e-59 231.5 178 65.7
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 4.5e-58 228.4 184 60.9
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 5.8e-58 228.0 174 64.4
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 5.8e-58 228.0 154 74.7
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 1.7e-57 226.5 182 62.6
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 2.2e-57 226.1 138 78.3
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 6.5e-57 224.6 256 49.2
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 1.1e-56 223.8 206 58.7
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 3.2e-56 222.2 168 69.0
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 5.5e-56 221.5 202 61.4
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 4.6e-55 218.4 158 69.6
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 1.0e-54 217.2 137 83.2
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 8.7e-54 214.2 176 61.4
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 2.5e-53 212.6 124 82.3
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 9.0e-51 204.1 133 68.4
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 1.2e-50 203.8 195 57.4
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 3.8e-49 198.7 342 38.3
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 1.9e-45 186.4 326 36.2
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 1.9e-45 186.4 326 36.2
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 6.3e-44 181.4 170 54.1
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 4.1e-43 178.7 179 53.1
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 6.9e-43 177.9 111 73.9
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 1.3e-41 173.7 138 63.0
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 2.1e-39 166.4 169 47.3
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 4.4e-37 158.7 191 49.7
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 5.7e-37 158.3 139 59.7
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 2.8e-36 156.0 137 58.4
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 1.9e-32 143.3 171 45.0
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 5.2e-30 135.2 115 61.7
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 2.6e-29 132.9 121 57.0
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 4.4e-29 132.1 82 69.5
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 2.8e-28 129.4 232 40.1
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 6.5e-25 118.2 277 29.2
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 4.4e-21 105.5 97 61.9
Thhalv10003074m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 6.5e-17 91.7 95 55.8
CSS0035148 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 2.1e-15 86.7 83 59.0
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 2.6e-13 79.7 55 72.7
MD17G1111600 Malus domestica HOM05D007219 ORTHO05D008995 1.6e-10 70.5 71 56.3
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 2.7e-10 69.7 133 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 1.1e-08 64.3 129 35.7
CSS0030489 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 9.5e-08 61.2 34 82.4
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-06 57.0 34 79.4


User provided reference genes

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