Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 3.1e-162 575.1 295 100.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.3e-155 553.1 287 97.9
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.4e-149 533.1 287 94.4
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 4.2e-135 485.0 291 85.9
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.5e-116 423.3 291 75.9
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.7e-115 418.7 293 76.1
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 7.8e-113 411.0 291 73.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.3e-112 410.2 287 75.6
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 3.8e-112 408.7 287 75.3
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 8.6e-112 407.5 287 73.2
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.8e-110 402.5 292 74.3
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.8e-110 402.5 288 71.2
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 4.7e-110 401.7 294 72.8
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 6.1e-110 401.4 290 71.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 6.1e-110 401.4 297 73.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 8.0e-110 401.0 294 72.4
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.4e-109 400.2 292 75.3
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 3.1e-109 399.1 288 70.1
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 4.0e-109 398.7 291 72.2
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 5.2e-109 398.3 291 71.8
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 6.8e-109 397.9 292 74.7
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.0e-108 396.4 292 72.9
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.6e-108 396.0 291 71.5
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.7e-107 393.3 290 70.0
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.7e-107 393.3 293 71.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 1.7e-107 393.3 294 70.4
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 4.9e-107 391.7 291 70.1
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.9e-106 389.8 292 70.9
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.4e-106 389.4 291 69.1
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 5.4e-106 388.3 290 69.7
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 7.0e-106 387.9 294 69.7
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.3e-104 382.9 287 72.5
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 3.0e-104 382.5 290 68.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.2e-102 377.1 294 70.1
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 5.2e-101 371.7 300 67.0
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.8e-100 368.2 291 67.7
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.7e-99 366.7 290 68.6
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 4.9e-99 365.2 290 68.3
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 6.4e-99 364.8 292 67.1
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-98 364.0 292 65.8
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.2e-98 362.5 292 65.4
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 7.0e-98 361.3 292 66.4
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-97 360.5 285 66.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-97 360.1 292 65.1
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.1e-97 359.8 297 67.3
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 2.7e-97 359.4 294 66.0
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 4.6e-97 358.6 291 67.0
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 6.0e-97 358.2 288 66.7
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.3e-96 357.1 290 67.9
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.7e-96 356.7 291 66.3
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.5e-95 353.6 292 64.7
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.9e-95 353.2 291 66.0
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 4.3e-95 352.1 292 62.7
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.1e-94 349.7 294 63.9
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.1e-94 349.7 295 65.8
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 2.8e-94 349.4 291 67.7
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.8e-94 349.4 301 64.8
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 6.2e-94 348.2 297 66.3
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 8.1e-94 347.8 292 63.4
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 4.0e-93 345.5 288 66.0
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 5.2e-93 345.1 288 67.4
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.2e-92 344.0 291 64.6
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.2e-92 344.0 292 66.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 4.4e-92 342.0 297 64.0
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 4.4e-92 342.0 296 63.9
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 7.5e-92 341.3 291 64.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 7.5e-92 341.3 293 64.5
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 9.9e-92 340.9 292 63.0
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 9.9e-92 340.9 293 64.8
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.3e-91 340.5 297 64.3
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.3e-91 340.5 291 64.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.3e-91 340.5 293 64.8
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 2.2e-91 339.7 291 64.3
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.2e-91 339.7 291 64.3
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 6.4e-91 338.2 294 63.6
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 2.4e-90 336.3 291 64.6
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.1e-89 333.2 292 64.4
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 2.1e-89 333.2 300 65.3
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.5e-89 332.4 299 63.2
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.3e-88 330.5 290 65.2
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.7e-88 330.1 294 63.6
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.1e-87 327.4 291 61.9
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 1.9e-87 326.6 290 62.8
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.5e-87 326.2 314 61.5
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.3e-87 325.9 301 62.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 9.5e-87 324.3 301 61.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 8.1e-86 321.2 295 63.1
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.4e-85 320.5 289 61.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.0e-85 318.9 289 61.6
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.6e-84 316.2 294 60.9
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.1e-82 310.8 294 60.5
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.7e-81 306.2 245 68.2
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 7.8e-81 304.7 289 58.5
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.1e-79 300.8 303 57.1
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-77 294.3 295 58.0
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.4e-77 293.9 290 58.3
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.4e-77 293.1 300 57.7
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 4.4e-76 288.9 298 58.1
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 4.9e-75 285.4 301 57.1
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.9e-75 285.4 310 57.1
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.1e-74 284.3 309 55.3
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 2.4e-74 283.1 293 56.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 7.1e-74 281.6 304 54.9
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 7.1e-74 281.6 311 56.3
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.8e-69 266.9 303 55.8
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 7.9e-65 251.5 295 51.2
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.3e-62 244.2 293 50.9
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 2.1e-62 243.4 299 49.5
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.4e-61 240.7 287 50.5
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.0e-61 239.2 297 49.8
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.9e-58 230.3 307 48.2
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 3.5e-57 226.1 302 44.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 7.9e-57 224.9 233 56.7
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 3.0e-56 223.0 279 48.0
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 3.9e-56 222.6 302 43.4
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.9e-55 220.3 296 46.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 4.2e-42 176.0 342 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.7e-41 173.3 296 38.5
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.8e-35 152.9 253 45.1
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 4.2e-34 149.4 251 39.8
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.1e-31 141.4 104 67.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.0e-27 128.3 97 66.0
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 3.2e-26 123.2 98 66.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.8e-21 107.5 270 32.6
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 2.0e-20 104.0 286 31.1
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.0e-19 101.7 76 67.1
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.4e-16 91.3 103 51.5
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.4e-15 86.3 54 72.2
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.6e-12 77.8 74 50.0
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 5.0e-11 72.8 181 30.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.7e-09 67.0 45 64.4


User provided reference genes

Program Settings