Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 4.0e-171 604.7 321 100.0
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 3.4e-162 575.1 321 95.3
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 1.7e-150 536.2 322 90.1
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 1.9e-128 463.0 317 80.8
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 9.4e-96 354.4 315 65.4
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 1.8e-91 340.1 318 60.1
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 5.3e-91 338.6 310 61.3
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 4.5e-90 335.5 324 60.5
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.8e-89 332.4 324 61.1
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 1.4e-88 330.5 318 61.6
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 3.2e-88 329.3 322 59.0
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 5.5e-88 328.6 307 60.9
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.8e-86 323.6 310 62.9
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 3.9e-86 322.4 315 61.6
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 5.2e-86 322.0 302 61.6
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.1e-85 320.9 324 59.9
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 9.7e-85 317.8 294 62.2
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 9.7e-85 317.8 279 63.8
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.7e-84 317.0 293 62.8
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 3.7e-84 315.8 315 58.7
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.8e-84 315.5 292 63.7
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 6.3e-84 315.1 316 57.6
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 8.2e-84 314.7 336 55.4
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 1.4e-83 313.9 325 58.2
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 2.4e-83 313.2 312 59.0
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.2e-82 310.8 323 57.3
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 5.9e-82 308.5 323 58.2
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.7e-81 307.0 329 55.6
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.2e-81 306.6 303 59.1
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 2.9e-81 306.2 313 58.5
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 3.8e-81 305.8 308 59.7
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 3.8e-81 305.8 319 57.7
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 6.5e-81 305.1 303 58.7
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 8.5e-81 304.7 335 54.3
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 1.1e-80 304.3 308 58.4
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 1.5e-80 303.9 324 57.4
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.5e-80 303.1 310 56.5
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 5.5e-80 302.0 322 56.5
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 7.2e-80 301.6 303 58.7
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.2e-80 301.6 310 56.5
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.6e-79 300.4 335 55.2
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 4.7e-79 298.9 348 55.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 2.3e-78 296.6 315 55.9
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 2.3e-78 296.6 313 57.5
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 3.0e-78 296.2 309 56.0
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 5.2e-78 295.4 330 56.4
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 8.8e-78 294.7 335 54.3
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 8.8e-78 294.7 344 53.5
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 3.4e-77 292.7 314 55.4
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 7.5e-77 291.6 314 56.7
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 1.7e-76 290.4 313 55.9
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 2.4e-75 286.6 315 54.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 3.1e-75 286.2 323 55.4
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 2.7e-74 283.1 318 54.7
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 3.5e-74 282.7 281 59.1
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 7.7e-74 281.6 332 52.1
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 2.2e-73 280.0 220 68.6
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 7.2e-72 275.0 321 53.9
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 7.2e-72 275.0 328 52.7
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.2e-71 274.2 313 54.6
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.6e-71 273.9 322 53.4
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 4.7e-71 272.3 314 54.1
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 6.1e-71 271.9 321 53.6
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 8.0e-71 271.6 311 55.3
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.0e-70 271.2 308 54.2
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 1.0e-70 271.2 315 54.6
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 1.4e-70 270.8 317 52.1
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.0e-70 269.6 328 52.1
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 5.2e-70 268.9 333 50.2
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 1.5e-69 267.3 315 53.3
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 2.6e-69 266.5 344 51.5
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.4e-69 266.2 290 56.9
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 9.8e-69 264.6 321 53.3
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 1.3e-68 264.2 327 52.0
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.7e-68 263.8 297 54.2
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 2.8e-68 263.1 322 52.2
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 4.8e-68 262.3 324 51.2
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 4.8e-68 262.3 350 49.7
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 6.3e-68 261.9 328 51.5
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.1e-67 261.2 310 51.0
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.4e-67 260.8 328 51.5
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 3.1e-67 259.6 346 49.4
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 9.1e-67 258.1 345 49.0
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 2.0e-66 256.9 395 46.6
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 2.7e-66 256.5 316 51.6
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 7.7e-66 255.0 313 53.4
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 2.3e-65 253.4 312 50.0
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 5.0e-65 252.3 276 54.7
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 6.6e-65 251.9 317 51.7
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.5e-64 250.8 318 51.3
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 1.9e-64 250.4 279 54.5
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 1.9e-64 250.4 321 51.7
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.3e-64 249.6 215 62.8
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.2e-63 247.7 317 49.2
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 8.0e-63 245.0 290 53.1
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.4e-62 244.2 487 40.0
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.3e-62 243.4 278 54.3
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.3e-62 243.4 322 50.6
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 1.2e-61 241.1 254 56.3
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.7e-61 238.8 351 47.3
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.5e-61 238.4 278 54.3
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 9.8e-61 238.0 294 50.7
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 9.8e-61 238.0 173 74.0
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 1.3e-60 237.7 325 47.4
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 8.3e-60 235.0 323 49.8
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.6e-58 230.7 319 47.3
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 2.0e-58 230.3 320 48.8
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 2.3e-57 226.9 366 44.3
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 6.6e-57 225.3 289 50.2
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.5e-56 223.4 221 62.0
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 6.1e-55 218.8 240 55.8
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.2e-53 214.5 306 49.0
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 1.5e-53 214.2 314 45.9
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.4e-51 206.8 319 46.4
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 3.0e-49 199.9 149 71.8
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 5.0e-49 199.1 235 54.0
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 1.5e-48 197.6 202 57.4
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.5e-45 187.6 302 41.4
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 9.8e-45 184.9 323 42.7
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 6.4e-44 182.2 209 50.2
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.6e-39 167.5 112 77.7
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 2.6e-37 160.2 114 73.7
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 1.7e-36 157.5 286 39.9
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 3.5e-34 149.8 126 66.7
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.0e-33 148.3 155 52.9
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 7.3e-32 142.1 231 43.3
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 7.3e-32 142.1 117 67.5
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.2e-31 139.0 176 50.6
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 8.7e-25 118.6 106 59.4
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.5e-24 117.9 243 36.6
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 6.4e-20 102.4 68 73.5
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 5.4e-19 99.4 216 35.6
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 2.7e-18 97.1 322 31.7
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 3.5e-18 96.7 83 62.7
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.0e-17 93.6 179 36.9
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.0e-17 93.6 179 36.9
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 5.1e-17 92.8 90 56.7
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.5e-16 91.3 189 38.6
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 2.4e-11 73.9 51 68.6
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 1.8e-09 67.8 163 35.6
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 2.3e-09 67.4 66 57.6
QL03p064635 Quercus lobata HOM05D005155 ORTHO05D006266 1.1e-08 65.1 61 62.3


User provided reference genes

Program Settings