Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024134.2 Cucumis melo HOM05D003304 ORTHO05D003762 3.9e-28 127.9 88 100.0
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 3.7e-26 121.3 65 96.9
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 5.3e-25 117.5 88 92.0
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 1.5e-11 72.8 50 74.0
Atru.chr6.1997 Acer truncatum HOM05D003304 ORTHO05D003762 4.3e-11 71.2 52 75.0
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 5.7e-11 70.9 49 79.6
Sed0000258 Sechium edule HOM05D003304 ORTHO05D003762 3.7e-10 68.2 52 73.1
Nitab4.5_0000570g0270 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.8e-10 67.8 49 77.6
Prupe.1G133400 Prunus persica HOM05D003304 ORTHO05D003762 4.8e-10 67.8 55 69.1
MELO3C030438.2 Cucumis melo HOM05D003304 ORTHO05D003762 8.2e-10 67.0 39 92.3
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 1.4e-09 66.2 57 64.9
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 1.4e-09 66.2 53 67.9
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 1.4e-09 66.2 53 67.9
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 2.4e-09 65.5 50 70.0
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 3.1e-09 65.1 54 66.7
MELO3C019194.2 Cucumis melo HOM05D003304 ORTHO05D003762 3.1e-09 65.1 39 89.7
Phvul.009G249600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 4.1e-09 64.7 50 68.0
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 4.1e-09 64.7 53 67.9
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 5.3e-09 64.3 58 65.5
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 5.3e-09 64.3 52 65.4
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 6.9e-09 63.9 53 66.0
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 6.9e-09 63.9 51 70.6
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 9.1e-09 63.5 52 67.3
Sed0009993 Sechium edule HOM05D003304 ORTHO05D003762 9.1e-09 63.5 88 67.0
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 1.2e-08 63.2 58 63.8
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 1.2e-08 63.2 58 63.8
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 1.2e-08 63.2 58 63.8
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 1.2e-08 63.2 58 63.8
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 1.2e-08 63.2 64 59.4
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 1.2e-08 63.2 59 62.7
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.2e-08 63.2 59 62.7
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 1.2e-08 63.2 53 66.0
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 1.2e-08 63.2 51 66.7
Solyc12g099450.3 Solanum lycopersicum HOM05D003304 ORTHO05D003762 1.2e-08 63.2 50 70.0
Sopen12g034120 Solanum pennellii HOM05D003304 ORTHO05D003762 1.2e-08 63.2 50 70.0
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 2.0e-08 62.4 59 62.7
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 2.6e-08 62.0 71 57.7
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 3.4e-08 61.6 55 60.0
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 3.4e-08 61.6 51 62.7
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 4.5e-08 61.2 57 63.2
SalBow2G2784 Salvia bowleyana HOM05D003304 ORTHO05D003762 4.5e-08 61.2 49 67.3
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 5.9e-08 60.8 52 67.3
CAN.G261.4 Capsicum annuum HOM05D003304 ORTHO05D003762 7.7e-08 60.5 48 68.8
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 7.7e-08 60.5 57 63.2
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 7.7e-08 60.5 50 72.0
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 7.7e-08 60.5 52 63.5
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 7.7e-08 60.5 52 63.5
vmacro15219 Vaccinium macrocarpon HOM05D003304 ORTHO05D003762 7.7e-08 60.5 56 60.7
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 1.0e-07 60.1 56 64.3
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 1.0e-07 60.1 52 63.5
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 1.3e-07 59.7 52 65.4
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 1.3e-07 59.7 56 55.4
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 1.3e-07 59.7 51 68.6
PGSC0003DMG400004631 Solanum tuberosum HOM05D003304 ORTHO05D003762 1.3e-07 59.7 51 72.5
Lalb_Chr18g0051571 Lupinus albus HOM05D003304 ORTHO05D003762 1.7e-07 59.3 47 61.7
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 2.2e-07 58.9 55 60.0
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 2.2e-07 58.9 55 63.6
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 2.9e-07 58.5 56 60.7
BcaC03g17699 Brassica carinata HOM05D003304 ORTHO05D003762 3.8e-07 58.2 50 60.0
CANSAT78G0081 Cannabis sativa HOM05D003304 ORTHO05D003762 3.8e-07 58.2 61 57.4
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 3.8e-07 58.2 49 67.3
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 3.8e-07 58.2 58 60.3
Sopen01g028290 Solanum pennellii HOM05D003304 ORTHO05D003762 5.0e-07 57.8 63 58.7
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 6.5e-07 57.4 54 63.0
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 6.5e-07 57.4 57 61.4
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 8.5e-07 57.0 53 60.4
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 8.5e-07 57.0 60 50.0
Solyc01g066640.2 Solanum lycopersicum HOM05D003304 ORTHO05D003762 8.5e-07 57.0 52 67.3
PGSC0003DMG400035598 Solanum tuberosum HOM05D003304 ORTHO05D003762 8.5e-07 57.0 52 67.3
Glyma.07G246500 Glycine max HOM05D003304 ORTHO05D003762 1.1e-06 56.6 53 62.3
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 1.1e-06 56.6 50 62.0
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 1.4e-06 56.2 53 54.7
Rhsim02G0007700 Rhododendron simsii HOM05D003304 ORTHO05D003762 1.4e-06 56.2 59 59.3
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 2.5e-06 55.5 53 60.4
Nitab4.5_0004498g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.5e-06 55.5 42 71.4
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 2.5e-06 55.5 51 66.7
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 2.5e-06 55.5 51 66.7
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 4.2e-06 54.7 53 52.8
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 5.5e-06 54.3 50 56.0
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 5.5e-06 54.3 50 56.0
Nitab4.5_0001233g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 5.5e-06 54.3 42 71.4
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 5.5e-06 54.3 55 56.4
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 9.4e-06 53.5 51 62.7
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 9.4e-06 53.5 42 71.4
Lalb_Chr07g0177821 Lupinus albus HOM05D003304 ORTHO05D003762 9.4e-06 53.5 51 60.8
Potri.008G220700 Populus trichocarpa HOM05D003304 ORTHO05D003762 9.4e-06 53.5 51 62.7


User provided reference genes

Program Settings