Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.2e-284 981.1 505 100.0
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.1e-243 845.5 443 97.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.3e-218 762.3 429 92.5
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.5e-204 716.5 450 83.6
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.2e-169 600.5 447 70.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.0e-168 597.4 447 69.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.2e-168 596.3 447 69.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.9e-168 595.9 447 69.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.1e-164 583.9 436 69.3
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.7e-163 578.9 445 68.3
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 9.1e-162 574.3 456 67.8
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.5e-161 573.5 448 68.8
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 7.7e-161 571.2 448 66.5
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.0e-160 570.9 446 68.4
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.0e-160 570.9 443 66.8
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.0e-160 570.9 468 65.6
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.2e-160 569.7 444 68.9
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 5.0e-160 568.5 446 66.1
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.9e-159 566.6 443 67.3
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.5e-159 566.2 447 67.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.1e-158 561.6 409 70.7
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 7.9e-158 561.2 441 67.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.8e-155 552.0 426 69.0
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 6.3e-155 551.6 449 64.8
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.4e-154 549.7 447 65.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 9.1e-154 547.7 474 61.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.7e-152 543.5 443 66.4
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.7e-152 543.5 446 64.6
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 5.0e-152 542.0 444 64.6
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 5.0e-152 542.0 432 66.7
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.1e-151 540.8 458 63.8
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-151 540.4 465 62.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.9e-151 540.0 443 66.4
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.5e-151 539.7 442 65.6
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 3.2e-151 539.3 443 65.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.5e-151 538.5 468 61.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 5.5e-151 538.5 443 65.2
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.2e-150 537.3 401 69.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 6.1e-150 535.0 426 65.7
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-149 534.3 413 69.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 8.8e-149 531.2 458 63.3
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.0e-148 530.0 420 65.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.0e-148 530.0 441 64.9
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.4e-148 528.9 436 63.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.7e-148 528.5 431 64.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.2e-147 526.6 420 67.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.7e-147 525.8 440 62.7
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.1e-146 524.2 416 66.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.8e-146 523.5 444 61.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.8e-146 523.5 412 66.7
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.6e-145 520.4 441 62.4
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-144 517.7 404 66.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.7e-144 516.9 444 62.6
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.2e-144 516.5 372 73.1
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.9e-144 516.2 368 72.6
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.8e-144 515.8 440 61.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.8e-144 515.8 417 65.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-143 514.2 417 65.0
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.2e-143 512.3 403 67.0
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 7.2e-143 511.5 445 61.8
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.2e-142 510.8 448 60.7
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.6e-142 510.4 415 65.3
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-142 508.8 441 61.5
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-140 503.8 446 61.0
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.0e-140 503.4 382 69.1
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.3e-139 500.7 452 61.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.7e-139 500.4 440 60.2
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.8e-139 499.6 351 72.9
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.7e-139 499.2 458 58.5
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.1e-138 497.7 324 75.9
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 3.1e-138 496.1 412 62.6
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.1e-138 496.1 414 64.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 9.1e-138 494.6 444 59.0
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.2e-137 494.2 445 60.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 7.7e-137 491.5 455 57.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 7.7e-137 491.5 502 54.8
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.2e-136 490.0 474 55.7
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.5e-135 487.3 405 62.0
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 7.2e-135 485.0 484 58.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.2e-134 484.2 448 58.7
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-134 483.8 439 62.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.7e-134 483.0 466 57.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.0e-133 481.1 418 61.7
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.4e-133 480.7 379 67.3
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.4e-133 480.7 324 73.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.3e-133 479.9 419 61.1
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.0e-133 479.6 445 56.4
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 5.2e-133 478.8 416 62.0
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 5.2e-133 478.8 399 63.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.6e-132 476.5 446 57.6
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.8e-131 473.0 451 57.2
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.4e-130 470.7 454 56.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.8e-130 470.3 456 55.7
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.1e-130 469.5 366 67.2
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-130 469.2 439 58.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-130 469.2 451 57.0
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 7.0e-130 468.4 397 62.0
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.7e-129 466.5 440 58.0
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.7e-129 464.9 396 61.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.7e-128 463.8 416 58.9
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 5.0e-128 462.2 480 55.4
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 8.6e-128 461.5 414 58.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-126 457.2 456 56.8
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.7e-126 455.7 417 58.0
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 8.0e-126 454.9 419 59.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 2.0e-124 450.3 421 57.0
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.2e-123 446.8 421 57.7
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 2.2e-123 446.8 421 57.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 7.8e-121 438.3 374 64.2
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.7e-120 437.2 394 58.9
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-119 434.1 450 52.9
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.9e-119 433.7 320 70.6
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.1e-118 430.3 440 54.1
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 4.7e-118 429.1 440 54.1
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 4.0e-117 426.0 450 51.8
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.0e-117 426.0 472 53.6
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-115 420.6 433 52.0
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 4.9e-115 419.1 379 57.3
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.9e-115 419.1 435 52.0
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.0e-113 412.1 507 48.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 2.5e-111 406.8 433 50.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.1e-109 401.4 400 56.2
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.5e-108 397.5 431 51.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.4e-108 396.0 445 51.9
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.3e-107 394.4 264 74.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.4e-107 392.1 306 65.4
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.4e-106 389.0 406 52.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 3.5e-105 386.3 446 46.9
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.1e-103 381.3 328 58.2
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.6e-102 376.3 276 69.6
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.3e-101 373.6 354 56.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-101 373.2 414 49.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 3.4e-100 369.8 392 49.5
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.1e-93 346.7 301 61.8
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 8.4e-91 338.6 345 52.2
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 7.1e-90 335.5 367 48.8
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-89 334.3 400 48.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-89 334.0 397 49.1
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 3.5e-89 333.2 400 48.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.3e-87 326.6 401 46.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.3e-87 326.2 431 45.9
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.6e-86 323.2 340 49.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.2e-82 309.7 268 63.1
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.5e-81 306.6 425 44.5
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-80 305.1 362 48.6
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.3e-80 304.7 362 48.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-76 291.6 349 48.1
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 4.5e-76 289.7 349 48.1
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.4e-74 284.6 366 46.2
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.0e-73 279.3 205 69.3
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.5e-60 238.0 485 35.5
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.2e-58 230.3 168 69.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 4.2e-58 229.9 168 69.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.0e-48 197.2 153 64.1
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.7e-47 193.0 144 64.6
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.7e-46 191.4 200 51.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.1e-39 168.7 145 62.8
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.2e-34 149.4 94 75.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-32 145.2 166 50.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 9.7e-31 139.0 159 49.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.9e-27 127.5 139 53.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.5e-27 125.9 84 71.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-26 124.8 119 54.6
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.7e-25 120.2 99 59.6
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 4.4e-23 113.6 85 65.9
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 7.5e-23 112.8 92 60.9
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.2e-22 111.3 99 58.6
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.2e-20 105.5 147 51.0
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.3e-19 101.3 303 31.0
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.1e-18 99.0 204 34.8
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.0e-15 88.2 157 39.5
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.3e-14 85.5 58 74.1
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.3e-14 85.5 145 43.4
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 5.4e-13 80.1 54 66.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-13 80.1 54 66.7
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 7.0e-13 79.7 197 30.5
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.6e-12 78.6 71 59.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 5.9e-12 76.6 119 42.0
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 6.6e-11 73.2 61 59.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.1e-10 72.4 57 68.4
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 3.6e-09 67.4 197 28.4
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-06 57.8 178 30.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 6.4e-06 56.6 86 41.9


User provided reference genes

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