Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.9e-139 500.0 916 100.0
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 6.3e-121 439.5 905 94.5
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 4.6e-103 380.2 915 84.9
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 8.6e-94 349.4 905 86.5
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 4.0e-91 340.5 915 90.2
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 2.8e-68 264.6 915 69.5
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.1e-53 216.1 203 58.6
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 7.4e-53 213.4 167 63.5
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 1.3e-52 212.6 171 60.8
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.3e-52 212.6 169 62.1
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.4e-51 209.1 170 61.8
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 1.8e-51 208.8 207 54.6
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 2.4e-51 208.4 190 57.4
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 3.1e-51 208.0 174 59.2
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 4.0e-51 207.6 201 56.2
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 3.4e-50 204.5 152 62.5
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.4e-50 204.5 204 52.9
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 4.9e-49 200.7 194 55.7
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 4.9e-49 200.7 192 55.7
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.5e-49 200.3 203 52.7
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.9e-48 198.7 169 58.0
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 3.2e-48 198.0 203 52.2
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 1.2e-47 196.1 205 50.7
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 5.1e-46 190.7 201 53.2
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 1.1e-45 189.5 149 63.1
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.9e-45 188.7 183 54.6
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.9e-45 188.7 183 54.6
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 3.3e-45 188.0 175 56.6
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 9.6e-45 186.4 135 65.9
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 1.8e-43 182.2 153 58.8
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 3.1e-43 181.4 134 64.9
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 4.1e-43 181.0 170 57.1
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.5e-42 179.1 174 53.4
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.6e-42 178.3 174 52.9
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 2.2e-41 175.3 149 58.4
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 5.0e-41 174.1 149 57.7
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 6.5e-41 173.7 149 58.4
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 1.9e-40 172.2 143 60.1
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 3.2e-40 171.4 175 53.1
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 4.2e-40 171.0 215 74.9
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 2.1e-39 168.7 213 74.6
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.1e-39 168.7 184 51.1
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 7.9e-39 166.8 161 50.9
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-38 166.0 123 63.4
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 8.7e-38 163.3 123 62.6
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.8e-36 157.5 121 61.2
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 8.2e-36 156.8 184 43.5
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 5.3e-35 154.1 159 50.3
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 4.5e-34 151.0 169 47.3
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 7.7e-34 150.2 159 49.7
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 3.8e-33 147.9 162 46.9
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.6e-31 142.5 218 39.0
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 2.1e-31 142.1 165 47.3
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.7e-31 141.7 202 43.6
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 2.6e-29 135.2 205 66.8
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.3e-29 134.8 206 68.4
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.2e-28 132.1 202 42.1
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.2e-28 132.1 206 67.0
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 6.3e-28 130.6 215 65.1
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 6.3e-28 130.6 215 65.1
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 8.2e-28 130.2 94 66.0
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 4.5e-26 124.4 153 41.8
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 5.0e-25 120.9 194 65.5
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 9.4e-24 116.7 214 66.4
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 3.0e-22 111.7 115 50.4
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.1e-21 109.8 178 34.8
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 2.0e-21 109.0 192 50.5
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 2.8e-20 105.1 209 61.2
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 8.2e-20 103.6 172 34.9
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.4e-19 102.8 180 34.4
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.4e-19 102.1 183 32.8
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 3.1e-19 101.7 87 60.9
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 3.1e-19 101.7 168 32.1
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 5.3e-19 100.9 185 32.4
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 7.0e-19 100.5 174 32.8
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 7.0e-19 100.5 170 31.2
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.6e-18 99.4 164 35.4
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 2.0e-18 99.0 174 31.6
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 3.5e-18 98.2 165 30.9
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 4.5e-18 97.8 184 33.7
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 5.9e-18 97.4 180 34.4
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 5.9e-18 97.4 180 32.8
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 7.7e-18 97.1 180 34.4
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.0e-17 96.7 180 33.9
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 2.2e-17 95.5 186 33.3
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 2.2e-17 95.5 168 33.3
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 2.9e-17 95.1 184 31.5
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 3.8e-17 94.7 178 31.5
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 5.0e-17 94.4 175 32.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 5.0e-17 94.4 183 34.4
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 6.5e-17 94.0 159 32.1
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 8.5e-17 93.6 176 33.5
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.1e-16 93.2 171 34.5
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.5e-16 92.8 207 30.9
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.5e-16 92.8 175 32.0
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.5e-16 92.8 160 33.8
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.5e-16 92.8 190 31.6
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.9e-16 92.4 162 35.8
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 2.5e-16 92.0 159 32.1
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 2.5e-16 92.0 173 31.2
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 3.2e-16 91.7 173 30.6
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 3.2e-16 91.7 187 32.1
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 5.5e-16 90.9 205 31.7
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 7.2e-16 90.5 174 30.5
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 2.7e-15 88.6 214 29.9
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 4.7e-15 87.8 175 32.0
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 6.1e-15 87.4 158 29.7
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 6.1e-15 87.4 192 33.9
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 8.0e-15 87.0 185 29.7
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 8.0e-15 87.0 163 31.3
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 1.8e-14 85.9 188 28.2
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 2.3e-14 85.5 183 29.0
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 3.0e-14 85.1 184 31.5
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 8.8e-14 83.6 185 30.3
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 1.2e-13 83.2 175 30.3
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.2e-13 83.2 173 29.5
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.5e-13 82.8 185 32.4
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 2.0e-13 82.4 172 32.6
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 2.0e-13 82.4 175 33.1
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 2.6e-13 82.0 200 31.5
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 3.3e-13 81.6 167 31.1
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 3.3e-13 81.6 193 31.6
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 4.4e-13 81.3 165 32.1
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 5.7e-13 80.9 166 31.3
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.7e-13 80.9 166 31.9
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 7.5e-13 80.5 153 30.1
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 7.5e-13 80.5 156 28.8
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.5e-13 80.5 166 31.3
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 7.5e-13 80.5 177 27.7
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 9.7e-13 80.1 156 28.2
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 9.7e-13 80.1 74 52.7
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 1.3e-12 79.7 166 31.9
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 2.2e-12 79.0 154 29.2
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 2.2e-12 79.0 154 29.9
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 2.2e-12 79.0 167 28.1
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 2.8e-12 78.6 178 32.0
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 4.8e-12 77.8 78 51.3
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.8e-12 77.8 156 27.6
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 4.8e-12 77.8 169 26.6
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 4.8e-12 77.8 155 31.6
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.3e-12 77.4 161 31.7
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 8.2e-12 77.0 160 26.9
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 8.2e-12 77.0 161 32.9
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 8.2e-12 77.0 176 28.4
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 1.1e-11 76.6 167 28.1
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 1.1e-11 76.6 167 28.1
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 1.1e-11 76.6 167 28.1
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.1e-11 76.6 200 48.5
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 1.1e-11 76.6 57 57.9
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 1.4e-11 76.3 167 28.1
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 2.4e-11 75.5 199 31.7
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 3.1e-11 75.1 188 29.3
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.1e-11 75.1 166 31.3
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 4.1e-11 74.7 167 28.1
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.1e-11 74.7 208 26.0
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 4.1e-11 74.7 75 53.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 5.3e-11 74.3 199 26.1
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 5.3e-11 74.3 156 30.1
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 2.7e-10 72.0 190 28.9
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 4.5e-10 71.2 202 27.2
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 4.5e-10 71.2 158 31.0
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 7.7e-10 70.5 193 28.0
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 7.7e-10 70.5 196 29.1
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.7e-09 69.3 157 28.0
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.8e-09 68.2 157 27.4
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 6.5e-09 67.4 203 58.1
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 6.5e-09 67.4 174 28.7
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 1.1e-08 66.6 158 27.2
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 4.2e-08 64.7 174 43.7
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 4.2e-08 64.7 165 28.5
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 4.2e-08 64.7 178 50.6
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 9.4e-08 63.5 168 28.0
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 2.1e-07 62.4 196 29.6
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.1e-07 62.4 178 50.6
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 6.1e-07 60.8 178 44.4
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 1.4e-06 59.7 185 27.6
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 1.4e-06 59.7 185 27.6
HanXRQChr13g0389361 Helianthus annuus HOM05D000003 ORTHO05D000007 1.8e-06 59.3 58 51.7
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 2.3e-06 58.9 135 27.4
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.3e-06 58.9 174 25.9
Aqoxy2G03931 Aquilegia oxysepala HOM05D008810 ORTHO05D010971 3.0e-06 58.5 178 28.1
HPP92_001177 Vanilla planifolia HOM05D003210 ORTHO05D000001 3.0e-06 58.5 173 25.4
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 6.8e-06 57.4 156 30.1


User provided reference genes

Program Settings