Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 2281.5 1169 100.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 2229.1 1169 97.4
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 2053.9 1147 92.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 2049.6 1168 89.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1846.2 1172 80.6
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1842.4 1171 80.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1839.7 1171 80.6
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1172 80.3
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1832.4 1173 80.6
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1823.1 1173 79.8
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1811.2 1171 79.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1173 79.9
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1806.2 1170 79.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1804.6 1171 79.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1171 78.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1796.2 1182 78.7
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1790.4 1181 78.5
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1789.2 1171 79.2
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1785.8 1171 78.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1173 79.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1777.7 1173 78.9
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1777.3 1173 78.9
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1773.8 1219 76.1
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1773.1 1215 76.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1172 78.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1219 76.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1765.4 1219 75.9
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1763.4 1171 77.4
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1756.1 1169 77.5
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1754.6 1172 77.4
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1753.4 1226 74.6
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1751.1 1173 78.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1746.1 1170 76.6
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1741.9 1170 76.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1739.2 1172 77.6
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1177 76.8
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1170 76.6
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1172 77.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1172 76.7
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1195 76.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1171 76.5
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1170 76.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1734.2 1208 74.9
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1733.0 1208 74.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1731.8 1173 76.4
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1729.9 1166 76.5
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1729.5 1194 75.7
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1211 74.5
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1228 73.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1170 75.9
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1208 74.7
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1714.9 1171 75.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1711.8 1171 75.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1171 75.5
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1708.7 1169 76.0
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1708.0 1172 76.9
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1707.2 1172 75.9
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1172 76.7
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1172 76.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1174 75.6
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1204 73.7
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1173 75.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1172 74.8
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1170 74.9
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1680.2 1172 74.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1679.5 1171 74.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1677.5 1231 72.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1172 73.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1172 74.0
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1157 74.9
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1174 74.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1177 74.1
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1671.8 1172 74.8
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1670.6 1174 74.2
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1660.6 1174 72.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1658.7 1203 73.2
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1173 73.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1651.0 1170 74.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1175 74.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1646.3 1177 73.3
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1174 73.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1176 74.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1645.2 1173 73.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1174 73.0
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1644.4 1231 70.1
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1642.1 1171 73.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1175 73.7
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1171 73.6
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1177 72.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1639.4 1191 72.8
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1638.2 1236 70.1
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1637.5 1099 77.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1636.7 1178 73.4
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1633.6 1176 72.4
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1633.2 1174 72.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1630.2 1175 73.7
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1627.1 1209 71.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1622.4 1170 72.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1620.9 1176 73.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1620.1 1181 71.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1616.3 1177 71.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1616.3 1177 71.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1607.0 1173 72.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1605.9 1072 77.6
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1179 71.9
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1172 72.6
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1179 71.9
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1580.1 1184 70.6
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1572.0 1164 71.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1565.1 1184 70.4
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1545.0 1147 70.2
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1538.9 1203 68.6
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1528.5 1177 68.5
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1524.6 1174 68.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1520.0 1174 68.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1501.1 1170 67.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1496.9 1181 66.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1495.3 1114 71.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1436.0 947 77.6
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1431.4 947 78.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1408.3 1172 65.1
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1384.8 1183 64.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1378.6 944 75.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1376.3 1034 72.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1333.5 970 72.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1238.8 958 69.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1223.8 1172 58.6
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1215.7 978 68.4
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1214.9 888 72.2
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1191.0 968 66.9
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1145.2 808 74.8
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1140.6 814 74.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1114.0 806 73.1
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1110.1 812 73.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.6e-302 1043.1 1167 52.9
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 4.2e-295 1018.5 726 73.7
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.1e-287 993.8 1174 48.3
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.2e-279 965.3 1213 46.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-263 914.1 540 84.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.4e-252 875.5 715 65.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.0e-249 866.7 603 75.5
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.8e-187 659.8 432 76.9
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.0e-164 584.3 360 81.7
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.3e-134 485.3 307 77.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 5.0e-131 473.4 307 77.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 8.6e-131 472.6 307 77.2
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.5e-130 471.9 898 38.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 9.5e-122 442.6 618 45.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.4e-117 428.7 284 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 3.0e-115 421.0 818 35.3
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.3e-106 390.6 1308 28.8
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 3.9e-91 340.9 229 71.6
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.7e-83 313.2 510 42.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.0e-78 299.7 197 73.6
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.1e-77 296.2 205 74.1
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-77 296.2 241 65.6
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.5e-74 285.0 183 75.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 3.4e-71 274.6 187 71.7
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-66 259.6 256 58.2
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 6.9e-64 250.4 181 71.3
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.8e-59 235.7 185 67.6
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 5.1e-59 234.2 144 80.6
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 5.2e-51 207.6 132 81.1
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.2e-49 202.2 152 69.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.2e-47 196.4 118 85.6
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-45 189.5 125 75.2
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-37 162.5 92 91.3
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.4e-26 125.2 91 68.1
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.4e-26 125.2 91 68.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 4.4e-26 124.8 86 72.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.7e-22 112.8 78 73.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.1e-20 105.9 83 67.5
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 8.3e-17 94.0 64 67.2
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 9.2e-16 90.5 46 80.4
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.9e-14 85.1 59 69.5
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.5e-13 83.2 97 48.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.6e-13 81.3 81 53.1


User provided reference genes

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