Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 3.9e-243 844.3 424 100.0
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 6.8e-211 737.3 400 93.0
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 7.0e-208 727.2 405 90.1
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 2.4e-187 659.1 405 82.5
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 9.3e-160 567.4 407 68.3
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.9e-157 559.7 408 69.1
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 2.5e-157 559.3 405 68.4
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.3e-156 557.0 405 69.1
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 3.7e-156 555.4 402 69.7
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 6.2e-156 554.7 402 69.7
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 6.9e-155 551.2 408 67.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.5e-154 550.1 401 68.3
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 2.6e-154 549.3 404 68.6
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.5e-154 548.5 401 68.3
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 7.6e-154 547.7 405 68.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.2e-153 546.2 407 65.8
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 8.4e-153 544.3 408 66.7
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.4e-152 543.5 407 66.3
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.4e-152 543.5 407 65.8
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 5.5e-152 541.6 407 67.3
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 9.3e-152 540.8 407 65.4
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 2.1e-151 539.7 408 65.4
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.1e-151 539.7 408 66.7
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 7.9e-151 537.7 425 63.5
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 7.9e-151 537.7 408 66.2
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 7.9e-151 537.7 406 67.7
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 3.0e-150 535.8 407 65.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.0e-150 535.8 409 66.0
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.0e-150 535.8 407 65.6
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.1e-149 533.9 407 65.6
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 7.4e-149 531.2 422 64.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.4e-149 531.2 402 68.2
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 9.7e-149 530.8 402 65.7
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 9.7e-149 530.8 407 66.8
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.3e-148 530.4 402 67.7
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.8e-148 529.3 412 66.7
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.4e-147 526.9 402 67.4
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 5.3e-147 525.0 409 66.0
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 7.6e-146 521.2 407 64.4
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.3e-145 520.4 409 65.8
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 3.8e-145 518.8 411 64.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.1e-144 517.3 408 65.0
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.2e-144 515.8 409 64.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 4.2e-144 515.4 408 63.5
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-143 513.8 419 63.7
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.6e-143 513.5 406 62.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 2.1e-143 513.1 484 58.1
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.7e-143 512.7 412 62.1
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.7e-143 512.7 406 61.8
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 3.6e-143 512.3 404 62.6
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 6.1e-143 511.5 409 63.8
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.0e-142 510.8 413 63.7
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.4e-142 510.4 405 63.0
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.3e-142 509.6 408 62.3
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 3.9e-142 508.8 395 64.1
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 5.1e-142 508.4 409 63.8
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 8.8e-142 507.7 408 62.0
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 8.8e-142 507.7 406 62.3
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 2.5e-141 506.1 407 62.7
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.5e-141 506.1 406 62.1
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 9.7e-141 504.2 407 62.7
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.7e-140 503.4 404 64.1
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.7e-140 503.4 435 59.3
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 2.2e-140 503.1 407 61.4
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 3.7e-140 502.3 405 61.7
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 8.2e-140 501.1 408 61.8
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.1e-139 500.7 403 62.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.8e-139 500.0 409 63.1
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 3.1e-139 499.2 416 62.0
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 4.1e-139 498.8 412 63.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.5e-138 496.9 406 61.8
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.0e-138 496.5 420 61.9
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.9e-137 492.7 407 61.4
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 6.5e-137 491.5 408 62.7
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.1e-136 490.7 407 62.9
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.9e-136 490.0 425 58.4
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 4.2e-136 488.8 408 61.8
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 3.0e-134 482.6 407 61.4
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 3.0e-134 482.6 407 61.4
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.1e-133 480.7 404 60.1
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.1e-133 480.7 406 61.3
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.6e-133 479.6 350 68.3
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 2.2e-132 476.5 404 59.7
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 8.2e-132 474.6 369 63.7
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-131 473.8 440 58.2
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-131 473.8 440 58.2
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.8e-131 473.4 407 60.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.4e-131 473.0 402 59.7
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.4e-130 469.2 400 60.2
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.7e-129 466.8 372 62.9
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 2.9e-129 466.1 396 59.6
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.1e-128 464.2 400 59.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.5e-128 463.0 401 59.4
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.5e-125 453.8 338 67.2
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.0e-125 453.4 420 56.0
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 7.4e-125 451.4 413 57.1
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.8e-124 448.7 402 58.5
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.2e-122 444.1 370 61.1
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.6e-122 443.7 399 58.4
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.0e-122 443.4 400 58.5
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 8.5e-121 438.0 399 55.9
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.9e-120 436.8 403 57.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.2e-120 436.0 425 55.1
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 3.2e-120 436.0 399 57.4
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.0e-117 426.8 323 64.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 9.7e-117 424.5 395 55.9
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 6.3e-116 421.8 397 55.2
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.2e-114 417.5 397 54.7
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.0e-114 416.8 393 55.0
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.7e-114 416.4 396 56.3
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.5e-114 416.0 419 54.2
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.5e-114 415.6 382 56.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.9e-113 412.9 405 55.3
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-112 411.0 399 54.1
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.9e-112 410.2 396 55.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.7e-111 406.4 401 54.6
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 4.7e-111 405.6 423 53.2
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.8e-110 403.7 399 53.6
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.3e-110 403.3 399 53.6
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.1e-107 394.4 324 58.6
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 9.1e-107 391.3 251 71.3
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-106 391.0 364 55.8
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 6.6e-105 385.2 382 52.9
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 6.6e-105 385.2 382 52.9
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-104 384.0 382 52.6
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.4e-102 377.5 328 58.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 6.8e-102 375.2 356 54.8
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 4.4e-101 372.5 418 50.0
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-100 370.9 419 49.6
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.2e-98 364.4 428 50.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 2.0e-98 363.6 418 49.5
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 6.6e-97 358.6 413 49.4
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 8.6e-97 358.2 391 49.1
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-96 356.7 262 66.0
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-96 356.7 277 63.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.8e-95 353.2 338 53.8
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-91 341.3 272 61.4
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 9.2e-91 338.2 338 53.3
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-90 337.4 286 64.7
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 7.8e-90 335.1 394 45.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 6.2e-87 325.5 384 45.3
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.3e-86 323.6 231 66.2
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 8.9e-86 321.6 263 64.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.0e-85 320.5 404 43.6
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.2e-84 317.0 257 59.9
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.2e-82 311.2 250 60.8
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.1e-82 310.5 267 58.8
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 4.3e-80 302.8 413 40.7
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.0e-73 281.6 364 45.9
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.9e-64 250.8 193 65.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.2e-60 237.3 156 66.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 2.1e-58 230.7 465 34.2
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 6.9e-46 189.1 367 35.4
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.1e-39 167.5 348 31.6
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 7.1e-35 152.5 121 66.9
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-32 144.4 109 62.4
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 7.4e-32 142.5 272 34.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.7e-31 140.2 271 34.7
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.1e-30 138.7 125 58.4
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 4.1e-30 136.7 128 60.9
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.0e-29 134.4 130 57.7
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 7.7e-29 132.5 333 27.3
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 3.2e-27 127.1 372 28.8
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 2.2e-23 114.4 67 82.1
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-20 105.1 68 69.1
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.7e-20 104.8 92 59.8
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.4e-19 101.7 108 51.9
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.0e-12 79.0 70 58.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.5e-11 73.2 71 54.9
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.1e-10 71.2 40 77.5
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.0e-09 68.9 56 64.3
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 6.7e-09 66.2 122 36.1


User provided reference genes

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