Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 2.6e-182 642.5 409 100.0
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 2.6e-182 642.5 409 100.0
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.2e-166 590.5 409 93.9
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.5e-161 573.5 424 87.7
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 7.3e-161 571.2 405 78.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.8e-160 569.3 409 86.8
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.0e-158 563.1 406 79.8
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.9e-157 559.3 399 87.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.9e-157 558.5 403 89.8
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.1e-156 557.4 405 89.9
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.9e-156 556.6 412 79.6
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.9e-156 556.6 399 90.5
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 7.8e-155 551.2 412 86.9
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.3e-154 550.4 401 81.8
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.7e-154 550.1 416 81.2
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.7e-154 550.1 416 81.2
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 6.6e-154 548.1 400 83.5
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.1e-153 547.4 405 86.2
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.1e-153 547.4 406 86.9
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-153 546.6 409 86.3
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.9e-153 546.6 406 87.7
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.5e-153 546.2 406 87.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 5.6e-153 545.0 406 87.4
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 7.3e-153 544.7 407 87.0
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 9.5e-153 544.3 405 85.9
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.2e-152 543.9 406 86.7
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.2e-152 543.9 407 87.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.2e-152 543.9 406 86.7
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.1e-152 543.1 406 86.0
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 2.1e-152 543.1 407 86.5
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.8e-152 542.7 413 83.8
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.8e-152 542.7 404 87.6
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.8e-152 542.7 396 83.6
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.6e-152 542.3 397 87.9
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 4.7e-152 542.0 411 86.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 8.1e-152 541.2 406 86.5
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.4e-151 540.4 399 88.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.8e-151 540.0 407 87.7
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.8e-151 540.0 410 72.9
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 4.0e-151 538.9 405 87.7
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.0e-151 538.9 406 86.5
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 5.2e-151 538.5 407 85.5
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.8e-151 538.1 406 86.7
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.2e-150 537.3 399 86.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.5e-150 537.0 409 85.1
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.5e-150 537.0 408 85.0
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 3.4e-150 535.8 409 84.8
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 7.6e-150 534.6 399 87.7
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.2e-149 533.1 406 74.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 8.4e-149 531.2 399 80.2
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 5.4e-148 528.5 396 87.9
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 6.0e-147 525.0 401 83.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.0e-146 524.2 402 85.8
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 1.0e-146 524.2 394 86.5
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.3e-146 523.9 401 77.3
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.3e-146 523.1 398 77.1
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 3.9e-146 522.3 396 82.1
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.1e-145 520.8 405 84.4
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 7.3e-145 518.1 409 84.1
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 8.1e-144 514.6 394 79.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.4e-143 513.8 429 71.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 4.0e-143 512.3 397 75.6
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.8e-143 511.5 429 71.1
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.8e-143 511.5 410 74.9
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.5e-142 510.4 402 81.6
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.0e-142 510.0 409 82.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.4e-142 508.8 406 74.6
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 9.9e-142 507.7 406 74.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.3e-141 507.3 402 74.4
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.7e-141 506.9 406 73.6
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.2e-141 506.5 400 75.5
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 2.4e-140 503.1 405 83.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.2e-140 502.7 400 70.5
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 2.1e-139 500.0 401 77.3
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.0e-138 497.7 391 84.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.9e-137 493.4 413 70.7
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.3e-137 492.3 412 72.6
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.3e-136 490.7 396 68.9
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.2e-136 488.4 404 78.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 5.3e-135 485.3 407 77.9
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.5e-134 483.8 390 80.5
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.4e-134 482.6 517 64.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 4.4e-134 482.3 392 79.6
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 5.8e-134 481.9 409 79.2
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-133 480.7 392 79.3
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-133 480.7 392 79.3
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.3e-133 480.7 392 79.3
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.3e-133 480.7 359 88.6
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.9e-133 479.6 392 79.1
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-132 477.6 404 80.9
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.9e-132 476.9 402 77.6
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.9e-132 476.9 404 81.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 3.2e-132 476.1 404 81.2
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.2e-132 475.7 392 79.8
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.1e-131 473.4 401 77.6
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.7e-131 473.0 392 78.6
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.7e-131 473.0 392 78.6
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 7.9e-131 471.5 399 81.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 6.6e-130 468.4 525 63.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.5e-129 466.5 389 73.8
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 3.3e-129 466.1 388 79.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.1e-127 459.5 404 68.8
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 3.4e-126 456.1 391 78.0
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.2e-125 453.4 426 66.0
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 8.4e-125 451.4 396 69.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.1e-124 451.1 436 65.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-120 437.2 402 60.2
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.2e-116 422.5 406 60.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 9.3e-116 421.4 389 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.6e-115 420.6 398 67.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.3e-114 417.5 422 61.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 5.1e-114 415.6 399 61.7
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-113 414.5 403 61.3
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-113 412.9 403 61.8
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 3.3e-113 412.9 403 61.8
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 7.4e-113 411.8 424 58.7
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 9.6e-113 411.4 391 69.1
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 6.3e-112 408.7 415 60.5
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 9.0e-111 404.8 406 57.6
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.2e-110 404.4 400 66.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-109 401.4 379 62.3
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 6.5e-109 398.7 391 75.2
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-108 397.9 433 56.8
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 5.5e-108 395.6 395 58.2
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 6.7e-106 388.7 445 50.1
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.9e-102 375.6 314 78.7
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 3.6e-99 366.3 428 49.5
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.6e-99 365.9 409 54.0
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 2.4e-95 353.6 335 65.7
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 4.7e-91 339.3 391 52.4
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 3.0e-90 336.7 316 70.9
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-86 324.7 392 49.2
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.9e-86 322.4 366 55.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 3.0e-82 310.1 387 46.8
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.7e-77 294.3 197 71.1
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 6.5e-77 292.4 416 48.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-72 277.7 256 67.2
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 6.3e-72 275.8 293 74.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.7e-67 260.4 398 43.0
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 4.7e-67 259.6 395 49.4
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 6.1e-67 259.2 194 66.0
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 7.0e-63 245.7 252 60.7
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.0e-61 241.9 252 60.3
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.3e-53 214.2 105 94.3
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 6.2e-51 206.1 212 51.9
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.2e-50 203.0 105 87.6
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 5.8e-49 199.5 212 51.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 5.8e-49 199.5 181 58.6
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 8.3e-48 195.7 129 73.6
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.3e-42 177.6 88 90.9
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.4e-39 168.3 385 35.6
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-37 161.0 106 68.9
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.5e-33 148.3 147 56.5
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 4.4e-33 146.7 95 73.7
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 5.8e-33 146.4 104 69.2
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.4e-31 141.7 186 45.7
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.1e-30 137.9 86 76.7
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 4.7e-27 126.7 81 74.1
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.0e-25 121.3 299 37.5
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 3.8e-24 117.1 57 87.7
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 6.0e-22 109.8 79 65.8
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.7e-21 108.2 74 68.9
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.8e-19 100.1 63 73.0
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.1e-19 99.4 50 80.0
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.6e-17 94.4 44 95.5
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.4e-17 94.0 105 48.6
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 1.3e-16 92.0 68 61.8
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.7e-16 91.7 43 95.3
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.2e-15 87.4 45 86.7
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.2e-15 87.4 43 88.4
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 9.3e-15 85.9 120 62.5
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.6e-14 83.6 105 46.7
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.3e-13 82.0 83 49.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 43 83.7
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 43 83.7
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 7.4e-12 76.3 38 86.8
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 1.6e-11 75.1 151 31.8
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.1e-10 72.4 46 65.2
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.5e-09 68.6 40 75.0
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.2e-07 60.5 48 58.3
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 2.7e-06 57.8 72 38.9
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 6.0e-06 56.6 198 26.8
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 6.0e-06 56.6 41 53.7


User provided reference genes

Program Settings