Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 8.0e-71 270.4 144 100.0
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 4.2e-64 248.1 144 88.2
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 1.5e-61 239.6 144 86.1
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 5.6e-56 221.1 144 79.9
Sed0017474 Sechium edule HOM05D007629 ORTHO05D009511 5.0e-41 171.4 138 68.8
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 1.4e-35 153.3 136 62.5
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 4.1e-35 151.8 136 58.8
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 9.2e-35 150.6 136 61.8
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 2.1e-34 149.4 108 71.3
Haze_03204 Corylus avellana HOM05D007629 ORTHO05D009511 3.5e-34 148.7 141 59.6
QL04p006494 Quercus lobata HOM05D007629 ORTHO05D009511 6.0e-34 147.9 134 63.4
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 7.8e-34 147.5 140 57.9
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 2.3e-33 146.0 135 59.3
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 5.1e-33 144.8 133 62.4
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 1.9e-32 142.9 140 57.9
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 1.9e-32 142.9 98 69.4
Lj3g0012705 Lotus japonicus HOM05D007629 ORTHO05D009511 4.3e-32 141.7 132 59.8
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 5.6e-32 141.4 161 53.4
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 1.2e-31 140.2 110 67.3
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 1.2e-31 140.2 161 53.4
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 2.1e-31 139.4 158 53.2
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 3.6e-31 138.7 162 51.9
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 8.1e-31 137.5 102 67.6
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 1.4e-30 136.7 145 54.5
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 1.8e-30 136.3 110 69.1
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 2.4e-30 136.0 100 70.0
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 2.4e-30 136.0 104 69.2
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 3.1e-30 135.6 157 52.2
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 3.1e-30 135.6 136 54.4
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 4.0e-30 135.2 140 50.7
Glyma.12G237100 Glycine max HOM05D007629 ORTHO05D009511 5.2e-30 134.8 136 54.4
Medtr8g037205 Medicago truncatula HOM05D007629 ORTHO05D009511 6.8e-30 134.4 132 56.8
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 1.2e-29 133.7 146 52.1
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 1.5e-29 133.3 132 58.3
TPR.G1849 Trifolium pratense HOM05D007629 ORTHO05D009511 4.4e-29 131.7 132 55.3
Potri.001G266500 Populus trichocarpa HOM05D007629 ORTHO05D009511 5.8e-29 131.3 140 52.9
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 7.6e-29 131.0 137 56.9
TWI53G0001 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 4.9e-28 128.3 132 54.5
TWI53G0918 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 4.9e-28 128.3 95 67.4
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 1.4e-27 126.7 152 47.4
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 2.4e-27 125.9 139 51.8
VMungo1127G0677 Vigna mungo HOM05D007629 ORTHO05D009511 2.4e-27 125.9 132 50.8
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 5.4e-27 124.8 150 51.3
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 9.2e-27 124.0 146 50.7
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 1.2e-26 123.6 128 55.5
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 3.5e-26 122.1 143 48.3
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 7.8e-26 120.9 143 49.0
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 1.0e-25 120.6 117 54.7
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 1.0e-25 120.6 133 52.6
Cfa010767 Carpinus fangiana HOM05D007629 ORTHO05D009511 2.3e-25 119.4 121 51.2
Cpa.g.c29394.2 Carica papaya HOM05D007629 ORTHO05D009511 3.0e-25 119.0 95 64.2
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 3.0e-25 119.0 92 60.9
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 1.1e-24 117.1 111 57.7
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 1.1e-24 117.1 111 57.7
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 3.3e-24 115.5 113 56.6
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 4.3e-24 115.2 107 57.0
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 5.6e-24 114.8 139 49.6
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 2.1e-23 112.8 115 57.4
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 2.1e-23 112.8 155 43.2
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 9.0e-22 107.5 138 49.3
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.2e-21 107.1 146 49.3
Sc11g0009160 Simmondsia chinensis HOM05D007629 ORTHO05D009511 2.0e-21 106.3 105 57.1
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 1.3e-20 103.6 137 45.3
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 2.2e-20 102.8 106 55.7
MBI01_g26744_MAGBIO Magnolia biondii HOM05D007629 ORTHO05D009511 2.9e-20 102.4 105 59.0
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 2.9e-20 102.4 111 55.9
AT1G07985 Arabidopsis thaliana HOM05D007629 ORTHO05D009511 3.8e-20 102.1 109 56.9
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 3.8e-20 102.1 105 56.2
AL1G18320 Arabidopsis lyrata HOM05D007629 ORTHO05D009511 1.9e-19 99.8 109 55.0
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 1.9e-19 99.8 156 42.9
Aa31sc522G10 Aethionema arabicum HOM05D007629 ORTHO05D009511 3.2e-19 99.0 139 46.0
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 3.2e-19 99.0 105 55.2
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 5.4e-19 98.2 100 54.0
Nitab4.5_0026617g0010 Nicotiana tabacum HOM05D007629 ORTHO05D009511 1.6e-18 96.7 123 43.9
Sp1g06620 Schrenkiella parvula HOM05D007629 ORTHO05D009511 1.6e-18 96.7 105 57.1
BraA06t23712Z Brassica rapa HOM05D000280 ORTHO05D000632 2.1e-18 96.3 106 54.7
BcaB02g06696 Brassica carinata HOM05D007629 ORTHO05D009511 2.7e-18 95.9 105 54.3
Carub.0001s0734 Capsella rubella HOM05D007629 ORTHO05D009511 2.3e-17 92.8 140 47.9
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 2.3e-17 92.8 118 47.5
Thhalv10009537m.g Eutrema salsugineum HOM05D007629 ORTHO05D009511 5.6e-16 88.2 107 54.2
ATR0332G023 Amborella trichopoda HOM05D007629 ORTHO05D009511 7.3e-16 87.8 140 40.7
BraA09t41945Z Brassica rapa HOM05D001466 ORTHO05D001452 1.3e-15 87.0 112 48.2
Rhsim01G0129300 Rhododendron simsii HOM05D007629 ORTHO05D009511 1.3e-15 87.0 124 47.6
BraA08t35446Z Brassica rapa HOM05D000280 ORTHO05D000632 1.6e-15 86.7 106 50.0
A09p66070 Brassica napus HOM05D001466 ORTHO05D001452 2.1e-15 86.3 112 48.2
CARHR007770 Cardamine hirsuta HOM05D007629 ORTHO05D009511 3.6e-15 85.5 107 53.3
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 1.4e-14 83.6 133 42.1
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 1.4e-14 83.6 133 42.1
BcaB03g13359 Brassica carinata HOM05D007629 ORTHO05D009511 6.9e-14 81.3 108 48.1
BcaC07g42509 Brassica carinata HOM05D007629 ORTHO05D009511 1.3e-12 77.0 138 39.9
C08p50220 Brassica napus HOM05D001466 ORTHO05D001452 8.4e-12 74.3 112 44.6
Peaxi162Scf00953g00011 Petunia axillaris HOM05D007629 ORTHO05D009511 1.2e-10 70.5 81 43.2
CDE05G3301 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 2.7e-10 69.3 104 46.2
CDE10G1066 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 2.7e-10 69.3 119 42.9
CDE05G0903 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.0e-09 67.4 107 45.8
CDE10G0639 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.0e-09 67.4 107 41.1
CDE05G1807 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.9e-08 63.2 102 38.2
AUR62023067 Chenopodium quinoa HOM05D007629 ORTHO05D009511 7.4e-08 61.2 96 41.7
BolC8t52551H Brassica oleracea HOM05D001466 ORTHO05D001452 1.6e-07 60.1 108 34.3
Hund16629 Selenicereus undatus HOM05D007629 ORTHO05D009511 3.7e-07 58.9 128 39.1
Sopen01g034240 Solanum pennellii HOM05D007629 ORTHO05D009511 8.1e-07 57.8 47 53.2


User provided reference genes

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