Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 0.0e+00 2473.0 1219 100.0
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 0.0e+00 1847.0 1227 77.7
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1593.2 1237 67.6
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 0.0e+00 1424.1 875 82.9
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 2.3e-288 996.1 1269 47.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 2.7e-284 982.6 1301 46.0
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.3e-283 980.3 1320 44.7
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 3.9e-283 978.8 1262 47.1
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 5.0e-283 978.4 1293 45.9
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 3.0e-275 952.6 1306 43.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 2.1e-273 946.4 1276 45.4
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 4.4e-271 938.7 1242 45.8
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 5.8e-271 938.3 1269 45.2
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 1.0e-267 927.5 1279 45.0
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.5e-266 923.7 1209 45.7
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 4.7e-265 918.7 1340 42.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 6.2e-265 918.3 1270 44.2
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 1.8e-264 916.8 1270 43.8
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 1.2e-263 914.1 1283 44.7
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 2.6e-263 912.9 1265 44.2
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 4.4e-263 912.1 1297 43.5
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 4.4e-263 912.1 1336 43.0
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 5.8e-263 911.8 1273 43.9
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.9e-261 906.7 1274 43.7
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 7.1e-261 904.8 1250 45.0
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.6e-260 903.7 1272 44.6
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 6.6e-259 898.3 1284 43.5
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.5e-258 897.1 1283 44.3
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 6.8e-256 888.3 1302 42.1
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 3.8e-254 882.5 1258 43.9
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 8.4e-254 881.3 1277 43.2
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 5.3e-248 862.1 1254 42.7
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 8.4e-246 854.7 1268 42.7
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.1e-237 827.8 1282 41.7
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.3e-237 824.7 1262 41.2
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 2.1e-236 823.5 1239 41.2
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 3.7e-233 812.8 1244 41.0
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 1.8e-232 810.4 1251 41.4
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 2.2e-230 803.5 1296 38.6
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.2e-228 797.7 1272 39.9
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.6e-228 797.3 1228 41.2
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 1.4e-224 784.3 1021 45.5
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 4.2e-221 772.7 1062 45.0
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 8.2e-217 758.4 1240 39.1
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 9.0e-216 755.0 1248 39.0
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.5e-215 754.2 1245 39.2
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.0e-215 753.8 1248 39.2
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 5.0e-214 749.2 1092 42.0
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 7.2e-213 745.3 1276 38.1
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 6.1e-212 742.3 1279 38.2
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 3.3e-210 736.5 1302 37.4
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 2.0e-207 727.2 1215 38.7
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 6.5e-206 722.2 1264 37.3
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.1e-202 711.4 829 47.6
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 1.1e-202 711.4 1452 35.7
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.0e-202 710.7 1277 38.0
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 2.2e-201 707.2 1300 38.2
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 6.5e-198 695.7 1231 36.8
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 2.3e-195 687.2 1224 36.9
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 4.4e-194 682.9 964 43.0
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.7e-190 671.0 1231 35.9
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 5.0e-190 669.5 1237 35.9
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 2.5e-189 667.2 1228 36.4
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 5.5e-189 666.0 1237 35.9
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 1.4e-187 661.4 1230 35.7
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 1.3e-185 654.8 1238 35.9
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 2.2e-185 654.1 849 44.3
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 4.8e-185 652.9 842 44.4
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.8e-184 651.0 1143 39.5
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 1.0e-182 645.2 1215 35.9
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.3e-182 644.8 1238 35.6
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.8e-172 610.5 1271 34.5
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.3e-165 586.6 857 41.8
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 3.7e-161 573.5 889 41.8
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 3.5e-159 567.0 1216 33.8
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 9.5e-157 558.9 1073 36.4
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 1.2e-148 531.9 911 38.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.1e-139 500.7 574 47.6
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 3.4e-138 497.3 1452 29.3
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 6.0e-127 459.9 1074 34.2
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 6.0e-127 459.9 607 43.0
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.5e-117 428.7 374 58.3
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.2e-114 419.1 373 58.4
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 6.5e-113 413.3 384 54.2
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 3.2e-112 411.0 377 57.6
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 6.7e-110 403.3 1296 26.9
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 4.3e-109 400.6 805 32.3
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 6.9e-107 393.3 1098 29.1
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 2.0e-98 365.2 318 56.3
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 6.1e-87 327.0 479 40.9
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 1.8e-86 325.5 368 48.1
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 8.5e-81 306.6 903 30.1
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 1.2e-79 302.8 369 47.7
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 2.7e-79 301.6 392 44.6
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 7.2e-72 276.9 293 50.2
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.4e-70 272.7 897 27.6
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.2e-66 259.6 252 53.6
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.6e-61 241.9 358 38.3
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.6e-61 241.9 358 38.3
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.2e-59 233.4 188 61.2
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 4.0e-54 218.0 974 23.6
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 3.5e-50 204.9 245 44.1
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.8e-47 195.3 439 37.8
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.0e-46 191.4 310 43.5
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 1.5e-45 189.5 198 51.5
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.2e-43 181.8 369 32.0
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 2.3e-41 175.6 477 26.4
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 5.4e-35 154.5 183 44.8
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 7.8e-34 150.6 185 45.9
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 4.7e-31 141.4 209 42.1
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 4.0e-30 138.3 148 49.3
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 1.1e-27 130.2 184 42.9
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.6e-26 126.3 187 39.6
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 2.7e-26 125.6 268 31.3
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.5e-24 119.8 178 41.0
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.8e-22 112.8 102 49.0
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 9.0e-22 110.5 143 42.0
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.0e-17 97.1 191 32.5
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 3.0e-17 95.5 125 44.0
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 6.9e-14 84.3 82 54.9
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 5.8e-13 81.3 103 39.8
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.2e-12 79.3 94 40.4
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 4.9e-12 78.2 151 32.5
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 8.4e-12 77.4 82 52.4
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.2e-11 75.5 82 51.2
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 4.2e-11 75.1 99 42.4
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.8e-09 69.7 82 48.8
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 3.9e-09 68.6 248 29.8
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 5.1e-09 68.2 94 46.8
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 8.7e-09 67.4 66 50.0
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 2.5e-08 65.9 94 44.7
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.7e-07 62.0 69 44.9
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 4.8e-07 61.6 313 26.8
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.1e-06 60.5 92 40.2
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 6.9e-06 57.8 73 45.2


User provided reference genes

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