Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 3.7e-213 744.6 364 100.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 7.9e-208 726.9 364 97.3
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.3e-198 694.9 362 93.1
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.0e-194 683.3 361 91.1
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 4.7e-176 621.3 362 82.6
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.1e-176 620.9 363 83.5
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 5.2e-175 617.8 366 81.7
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 8.8e-175 617.1 363 82.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.0e-174 615.9 363 82.4
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.6e-174 615.5 362 82.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 4.4e-174 614.8 368 80.2
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 7.4e-174 614.0 362 81.5
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.3e-173 613.2 363 81.5
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.7e-173 612.8 363 82.6
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 4.8e-173 611.3 362 82.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.4e-172 609.8 363 81.8
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.8e-172 609.4 364 81.6
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 9.1e-172 607.1 363 81.5
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-171 606.7 363 79.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.6e-171 606.3 359 81.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.6e-171 606.3 361 81.4
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.6e-171 606.3 367 79.3
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.0e-171 605.9 366 80.3
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 4.5e-171 604.7 361 79.5
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.7e-171 604.0 369 79.4
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.9e-169 599.4 369 78.9
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.5e-169 599.0 362 79.6
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-169 599.0 366 78.1
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.5e-169 599.0 359 79.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 3.2e-169 598.6 357 81.0
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.4e-169 597.0 362 78.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.2e-168 596.7 362 79.0
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.2e-168 596.7 359 79.9
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.6e-168 596.3 365 78.6
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.7e-168 595.5 362 79.3
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.7e-168 595.5 364 78.8
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.6e-168 595.1 362 79.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.6e-168 595.1 359 79.4
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 6.1e-168 594.3 362 79.0
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 6.1e-168 594.3 362 79.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 6.1e-168 594.3 362 79.6
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.0e-167 593.6 388 75.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-167 593.2 359 79.1
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.8e-167 592.8 365 78.6
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.3e-167 592.4 358 78.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.0e-167 591.7 359 78.8
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 5.2e-167 591.3 353 80.7
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 5.2e-167 591.3 357 79.3
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 6.7e-167 590.9 359 79.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 8.8e-167 590.5 390 74.4
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.2e-166 590.1 360 79.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.5e-166 589.7 359 79.7
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.0e-166 589.3 359 78.6
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.0e-166 589.3 361 79.2
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.6e-166 589.0 359 78.8
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-166 589.0 359 78.8
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.6e-166 589.0 360 78.6
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.4e-166 588.2 359 78.8
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 7.5e-166 587.4 359 77.7
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.3e-165 586.6 362 77.9
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-165 586.6 359 78.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.3e-165 586.6 364 78.0
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.7e-165 586.3 364 78.0
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.8e-165 585.5 359 79.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.7e-165 585.1 359 78.0
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.8e-165 584.7 362 77.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 4.8e-165 584.7 359 78.6
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 6.3e-165 584.3 359 79.4
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 8.2e-165 583.9 362 76.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 8.2e-165 583.9 356 78.1
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.1e-164 583.6 359 78.6
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.4e-164 583.2 358 77.7
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-164 583.2 366 75.7
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-164 582.8 366 75.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-164 582.8 366 75.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.1e-164 582.0 359 76.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 3.1e-164 582.0 359 77.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 9.1e-164 580.5 359 75.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.6e-163 579.7 358 79.1
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.6e-163 579.7 358 76.0
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.7e-163 577.4 358 76.3
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.2e-162 575.9 362 76.2
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.9e-162 575.5 369 74.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.0e-162 574.7 369 74.0
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 8.5e-162 573.9 359 77.7
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.1e-161 573.5 363 75.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.1e-161 573.5 359 76.9
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.1e-161 573.5 358 76.8
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.9e-161 572.8 358 74.9
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.7e-160 568.2 369 73.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.8e-159 566.2 368 73.1
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.3e-159 565.8 359 75.8
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.5e-158 563.1 416 69.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.2e-157 559.3 439 65.6
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 4.8e-157 558.1 363 76.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-154 550.1 451 62.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-154 548.9 331 80.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 4.0e-151 538.5 358 71.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.4e-150 535.4 355 70.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 4.4e-150 535.0 377 68.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 8.3e-149 530.8 358 70.4
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 4.1e-148 528.5 353 72.8
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.1e-148 528.5 455 58.7
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 3.5e-147 525.4 358 70.4
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 4.5e-147 525.0 359 68.2
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.4e-143 513.5 361 68.1
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 8.9e-143 510.8 361 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.4e-142 508.8 357 67.2
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 9.8e-142 507.3 387 68.0
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.0e-139 499.6 363 65.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 6.0e-139 498.0 344 74.1
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.7e-138 496.5 274 86.5
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 6.6e-138 494.6 520 51.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.2e-136 490.3 359 62.4
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 8.9e-135 484.2 356 64.0
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 6.8e-127 458.0 255 85.5
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 2.4e-124 449.5 270 79.6
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.7e-120 435.3 386 55.7
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.5e-115 419.1 275 73.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.9e-105 386.7 346 56.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.5e-105 386.3 348 55.2
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.1e-103 380.9 380 50.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.6e-99 367.1 302 59.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 6.5e-85 318.5 224 68.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 2.3e-82 310.1 271 60.1
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 4.3e-81 305.8 200 73.0
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 7.7e-78 295.0 177 77.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-76 289.3 181 77.9
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.5e-76 288.9 164 83.5
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.2e-75 287.7 161 85.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.7e-73 278.9 362 45.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 3.6e-67 259.6 183 68.3
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 6.7e-58 228.8 175 60.6
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 6.5e-53 212.2 118 84.7
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-44 184.1 106 79.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 3.2e-44 183.3 169 58.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.5e-36 157.1 94 81.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.1e-35 154.1 107 73.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.2e-27 128.3 177 42.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 9.8e-25 118.6 88 63.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 5.6e-20 102.8 57 86.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.1e-18 98.6 232 29.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.2e-18 96.3 55 78.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 5.2e-18 96.3 77 61.0
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.2e-17 95.1 62 67.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 5.8e-17 92.8 83 57.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 6.0e-14 82.8 48 83.3
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 5.1e-13 79.7 47 74.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.5e-09 68.2 74 47.3
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 4.6e-06 56.6 43 58.1
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.6e-06 56.6 32 78.1
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 6.0e-06 56.2 219 23.7


User provided reference genes

Program Settings