Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 3.4e-197 691.4 336 100.0
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 7.8e-186 653.7 346 92.8
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 1.6e-178 629.4 357 86.0
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 9.0e-158 560.5 348 79.3
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 6.1e-122 441.4 359 61.0
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 2.3e-121 439.5 345 62.6
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 3.7e-119 432.2 343 61.5
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 5.3e-118 428.3 345 60.6
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 1.6e-117 426.8 345 61.2
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 7.7e-117 424.5 349 61.0
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 1.3e-116 423.7 345 60.6
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 5.0e-116 421.8 344 60.8
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 8.5e-116 421.0 345 60.3
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 2.5e-115 419.5 349 59.0
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 2.5e-115 419.5 349 58.2
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 5.5e-115 418.3 345 60.3
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 1.6e-114 416.8 348 58.9
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 2.1e-114 416.4 345 59.7
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 2.1e-114 416.4 345 57.7
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 2.7e-114 416.0 354 58.5
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 6.1e-114 414.8 346 59.0
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 5.2e-113 411.8 351 58.7
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 5.2e-113 411.8 346 58.7
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 1.5e-112 410.2 345 56.8
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 2.0e-112 409.8 346 56.9
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 2.6e-112 409.5 333 60.4
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 2.6e-112 409.5 333 60.4
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 1.7e-111 406.8 343 58.6
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 6.3e-111 404.8 351 56.7
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 6.3e-111 404.8 321 62.0
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 8.3e-111 404.4 345 58.3
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 8.3e-111 404.4 351 56.4
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 1.8e-110 403.3 346 57.8
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 2.4e-110 402.9 346 58.4
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 4.1e-110 402.1 364 56.3
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 5.4e-110 401.7 328 59.5
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 1.6e-109 400.2 351 56.1
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 2.7e-109 399.4 327 57.8
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 2.7e-109 399.4 345 56.2
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 3.5e-109 399.1 344 57.3
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 1.0e-108 397.5 345 57.4
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 2.9e-108 396.0 345 56.5
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 2.9e-108 396.0 345 57.1
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 3.8e-108 395.6 349 55.9
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 5.0e-108 395.2 347 57.3
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 8.6e-108 394.4 348 56.6
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 1.5e-107 393.7 347 56.8
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 1.9e-107 393.3 344 57.0
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 3.3e-107 392.5 343 56.0
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 1.6e-106 390.2 328 57.9
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 4.7e-106 388.7 345 57.1
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 8.0e-106 387.9 349 56.4
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 6.8e-105 384.8 354 53.7
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 8.9e-105 384.4 347 56.2
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 8.9e-105 384.4 346 55.2
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 1.5e-104 383.6 347 54.5
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 1.3e-103 380.6 345 54.5
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.9e-103 378.6 347 56.2
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 5.4e-102 375.2 325 58.5
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 7.0e-102 374.8 312 60.6
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 1.3e-100 370.5 348 53.7
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 1.7e-100 370.2 328 56.7
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 3.9e-100 369.0 345 54.5
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 8.6e-100 367.9 325 56.9
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.9e-99 366.7 347 53.6
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 3.3e-99 365.9 334 54.8
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 9.5e-99 364.4 330 55.5
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 9.5e-99 364.4 347 54.2
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 1.2e-98 364.0 351 51.6
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 2.1e-98 363.2 344 52.3
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 6.1e-98 361.7 341 55.1
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 8.0e-98 361.3 348 50.0
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 8.0e-98 361.3 351 51.3
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 4.0e-97 359.0 346 51.7
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 6.8e-97 358.2 349 50.4
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 6.8e-97 358.2 349 50.4
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.3e-95 354.0 340 53.2
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.3e-95 354.0 339 53.4
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 1.3e-95 354.0 346 50.6
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 2.2e-95 353.2 275 63.6
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 4.9e-95 352.1 346 49.4
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 7.0e-94 348.2 363 47.4
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 7.0e-94 348.2 378 47.9
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 6.0e-93 345.1 373 47.2
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 9.5e-91 337.8 329 51.7
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 2.4e-86 323.2 326 49.7
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 5.4e-86 322.0 334 51.8
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 7.0e-86 321.6 272 59.6
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 6.6e-84 315.1 335 50.4
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 6.6e-84 315.1 268 59.3
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 9.5e-83 311.2 252 61.1
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 1.8e-81 307.0 341 49.0
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.9e-78 297.0 261 57.1
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 1.3e-76 290.8 311 50.2
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 1.6e-74 283.9 339 45.1
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 4.0e-73 279.3 262 54.6
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 1.5e-72 277.3 341 45.5
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 1.9e-70 270.4 299 51.2
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.7e-69 266.5 268 50.4
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 1.5e-64 250.8 261 49.4
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 3.8e-63 246.1 299 47.8
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 2.1e-61 240.4 214 55.1
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 3.5e-61 239.6 231 51.1
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 1.1e-59 234.6 189 56.1
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 3.3e-59 233.0 351 39.6
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 1.1e-57 228.0 190 59.5
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 2.2e-55 220.3 242 47.5
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.2e-40 171.4 130 57.7
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 9.3e-38 161.8 125 59.2
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 1.5e-32 144.4 100 68.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 3.4e-32 143.3 272 36.4
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 1.1e-27 128.3 216 37.0
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 4.4e-19 99.8 144 41.0
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 1.3e-15 88.2 69 55.1
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 1.5e-14 84.7 69 59.4
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 4.1e-09 66.6 83 48.2


User provided reference genes

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