Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.1e-128 461.8 239 100.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.5e-111 406.4 240 86.2
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.3e-105 384.4 247 83.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.5e-93 345.9 218 79.4
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.6e-82 309.3 217 70.5
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.3e-81 307.0 211 71.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.2e-79 300.4 211 70.6
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 217 70.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 217 70.0
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 211 70.6
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 211 70.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.9e-79 298.1 211 68.2
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 7.8e-79 297.7 217 68.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.8e-79 297.7 217 68.7
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.0e-78 297.4 211 68.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.7e-78 296.6 223 65.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.7e-78 296.6 217 68.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.3e-78 296.2 213 68.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-78 296.2 217 68.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.3e-78 296.2 211 67.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.3e-78 296.2 195 71.8
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.9e-78 295.8 214 68.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.5e-77 293.5 211 68.2
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.5e-77 293.5 222 67.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.5e-77 293.5 211 68.2
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.9e-77 293.1 213 67.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.5e-77 292.7 211 67.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.5e-77 292.7 212 68.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.3e-77 292.4 211 69.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.3e-77 292.4 213 67.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 9.5e-77 290.8 240 66.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 9.5e-77 290.8 239 66.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.2e-76 290.4 211 67.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.2e-76 290.4 217 65.0
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-76 290.0 223 65.0
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.1e-76 289.7 211 68.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.1e-76 289.7 201 69.7
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.6e-76 288.9 211 67.3
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.7e-76 288.5 211 67.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.7e-76 288.5 213 66.7
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 6.1e-76 288.1 217 65.4
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.0e-75 287.3 195 70.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.0e-75 287.3 210 67.1
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.4e-75 287.0 211 68.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-75 286.2 195 70.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.0e-75 285.4 204 66.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.2e-75 285.0 201 69.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 6.8e-75 284.6 217 66.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 8.9e-75 284.3 217 67.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 8.9e-75 284.3 218 63.3
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.0e-74 283.1 220 65.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.0e-74 283.1 195 69.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.0e-74 283.1 215 64.7
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.6e-74 282.7 211 65.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.6e-74 282.7 195 70.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 4.4e-74 282.0 211 66.4
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 5.8e-74 281.6 211 66.4
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.8e-74 281.6 197 70.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-73 280.4 211 65.4
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.3e-73 280.4 211 65.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.7e-73 278.9 216 65.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.7e-73 278.9 216 65.3
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.7e-73 278.9 211 64.9
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.7e-73 278.9 215 64.7
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.9e-73 278.5 205 66.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.4e-72 276.9 211 64.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.4e-72 276.9 211 64.9
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 4.1e-72 275.4 211 64.9
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.1e-72 275.4 222 64.9
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.1e-72 275.4 215 64.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 9.2e-72 274.2 220 64.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 9.2e-72 274.2 217 64.5
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.2e-71 273.9 211 63.0
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.0e-71 273.1 211 64.5
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-71 272.3 211 64.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.5e-71 272.3 220 60.9
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.6e-71 271.9 197 67.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.6e-71 271.9 201 67.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 6.0e-71 271.6 204 64.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.0e-71 271.6 211 64.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.0e-70 270.8 198 68.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.7e-70 270.0 207 64.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.3e-70 269.6 193 67.9
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.3e-70 269.6 201 66.7
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.9e-70 268.9 201 65.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 8.6e-70 267.7 195 65.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.9e-69 266.5 201 64.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.5e-69 266.2 201 64.2
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.3e-69 264.6 211 63.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.2e-68 263.8 209 61.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 8.0e-68 261.2 196 64.8
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.1e-67 259.2 190 65.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.2e-66 257.3 216 61.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 9.8e-66 254.2 208 61.5
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 9.8e-66 254.2 215 60.9
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.7e-65 253.4 202 65.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.2e-65 253.1 208 61.5
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.2e-65 253.1 210 61.9
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-65 252.3 210 61.4
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.7e-65 252.3 210 61.4
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.7e-65 252.3 210 61.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 6.4e-65 251.5 202 65.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.4e-64 249.6 210 60.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.2e-64 249.2 210 61.4
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 4.1e-64 248.8 201 60.7
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.1e-64 248.8 199 63.3
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.4e-64 248.4 192 63.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 9.2e-64 247.7 210 57.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-63 247.3 210 60.5
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.2e-63 247.3 210 60.5
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-63 247.3 201 60.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.2e-63 247.3 210 60.5
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-63 246.5 210 60.0
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-63 246.1 210 60.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.6e-63 245.4 210 60.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 7.8e-63 244.6 210 60.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 3.9e-62 242.3 211 59.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 6.6e-62 241.5 222 55.9
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-61 240.7 213 57.7
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.9e-61 240.0 201 61.2
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.6e-60 235.7 193 60.6
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.3e-59 233.0 195 60.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.8e-58 228.4 200 59.5
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.1e-55 219.9 213 54.5
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.5e-53 213.8 211 56.9
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 5.6e-53 211.8 213 54.9
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.7e-52 208.8 170 61.8
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-51 207.2 172 61.6
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.1e-51 206.1 149 67.1
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.9e-49 198.7 182 56.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-43 181.0 194 51.0
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 5.8e-42 175.3 112 71.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.4e-41 171.8 127 63.8
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.9e-38 162.5 195 48.2
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.5e-37 159.8 132 62.9
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.6e-36 156.0 101 71.3
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.6e-34 149.8 108 67.6
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.6e-31 140.6 108 62.0
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.0e-17 94.7 114 49.1
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 9.7e-13 78.2 67 55.2
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.3e-06 57.0 75 36.0
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.3e-06 57.0 75 36.0
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.0e-06 56.6 152 27.6


User provided reference genes

Program Settings