Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023812.2 Cucumis melo HOM05D017111 ORTHO05D002214 1.9e-139 499.2 262 100.0
CsaV3_5G006550 Cucumis sativus L. HOM05D000106 ORTHO05D002214 6.7e-116 421.0 259 86.1
ClCG02G013640 Citrullus lanatus HOM05D000106 ORTHO05D002214 9.3e-102 374.0 265 76.6
Sed0023898 Sechium edule HOM05D017111 ORTHO05D002214 4.8e-82 308.5 266 65.0
MELO3C023811.2 Cucumis melo HOM05D017111 ORTHO05D002214 7.2e-54 214.9 182 68.1
RcHm_v2.0_Chr1g0365101 Rosa chinensis HOM05D000106 ORTHO05D002214 6.8e-44 181.8 219 48.9
Ciclev10033425m.g Citrus clementina HOM05D000106 ORTHO05D002214 1.3e-39 167.5 254 41.3
Prupe.2G225100 Prunus persica HOM05D000106 ORTHO05D002214 3.0e-39 166.4 295 36.9
Manes.07G107100 Manihot esculenta HOM05D000106 ORTHO05D002214 5.8e-35 152.1 222 44.6
TAR623G0724 Trochodendron aralioides HOM05D000106 ORTHO05D002214 1.3e-34 151.0 254 39.0
DCAR_019153 Daucus carota HOM05D000106 ORTHO05D002214 1.6e-32 144.1 249 39.0
DCAR_019156 Daucus carota HOM05D000106 ORTHO05D002214 1.6e-32 144.1 249 39.0
Dinv31394 Davidia involucrata HOM05D000106 ORTHO05D002214 2.1e-32 143.7 234 41.0
DCAR_015246 Daucus carota HOM05D000106 ORTHO05D002214 1.2e-29 134.4 218 41.7
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 7.6e-27 125.2 234 38.5
RcHm_v2.0_Chr7g0221441 Rosa chinensis HOM05D000106 ORTHO05D002214 9.9e-27 124.8 198 41.4
Dinv31393 Davidia involucrata HOM05D000106 ORTHO05D002214 4.9e-26 122.5 218 39.0
FvH4_7g20860 Fragaria vesca HOM05D000106 ORTHO05D002214 6.4e-26 122.1 234 38.5
FAN06G4286 Fragaria x ananassa HOM05D000106 ORTHO05D002214 6.4e-26 122.1 234 38.5
DCAR_015243 Daucus carota HOM05D000106 ORTHO05D002214 1.1e-25 121.3 222 38.3
FAN06G2025 Fragaria x ananassa HOM05D000106 ORTHO05D002214 1.1e-25 121.3 234 38.5
FAN03G0510 Fragaria x ananassa HOM05D000106 ORTHO05D002214 1.4e-25 120.9 234 38.5
DCAR_015245 Daucus carota HOM05D000106 ORTHO05D002214 5.4e-25 119.0 195 40.5
MELO3C034234.2 Cucumis melo HOM05D000106 ORTHO05D002214 7.8e-24 115.2 77 74.0
GSVIVG01025057001 Vitis vinifera HOM05D000106 ORTHO05D002214 1.1e-20 104.8 236 34.7
DCAR_019152 Daucus carota HOM05D017111 ORTHO05D002214 2.0e-19 100.5 205 37.1
DCAR_019155 Daucus carota HOM05D017111 ORTHO05D002214 2.0e-19 100.5 205 37.1
Actinidia03773 Actinidia chinensis HOM05D000106 ORTHO05D002214 1.3e-18 97.8 258 32.2
Manes.11G136301 Manihot esculenta HOM05D000106 ORTHO05D002214 1.3e-18 97.8 227 36.6
Ciclev10030301m.g Citrus clementina HOM05D000106 ORTHO05D002214 1.4e-17 94.4 228 35.5
Oeu040271.1 Olea europaea HOM05D000106 ORTHO05D002214 7.1e-17 92.0 229 31.4
PGR102G0237 Punica granatum HOM05D000106 ORTHO05D002214 9.3e-17 91.7 260 30.0
Lj1C176T13 Lonicera japonica HOM05D000106 ORTHO05D002214 2.3e-15 87.0 220 31.4
Potri.013G030800 Populus trichocarpa HOM05D000106 ORTHO05D002214 2.3e-15 87.0 223 31.8
PGR102G0932 Punica granatum HOM05D000106 ORTHO05D002214 5.1e-15 85.9 260 29.2
MD11G1117200 Malus domestica HOM05D000106 ORTHO05D002214 1.1e-14 84.7 239 30.1
Lj1C176G15 Lonicera japonica HOM05D000106 ORTHO05D002214 1.5e-14 84.3 233 32.2
Potri.005G043700 Populus trichocarpa HOM05D000106 ORTHO05D002214 1.5e-14 84.3 235 29.8
Potri.013G030866 Populus trichocarpa HOM05D000106 ORTHO05D002214 1.9e-14 84.0 223 31.4
TWI79G0726 Tripterygium wilfordii HOM05D000106 ORTHO05D002214 9.6e-14 81.6 224 30.4
Thecc.10G061900 Theobroma cacao HOM05D017111 ORTHO05D002214 1.3e-13 81.3 96 51.0
SalBow7G0489 Salvia bowleyana HOM05D000106 ORTHO05D002214 2.1e-13 80.5 242 30.6
Dinv26285 Davidia involucrata HOM05D000106 ORTHO05D002214 2.8e-13 80.1 232 30.6
Eucgr.B02416 Eucalyptus grandis HOM05D000106 ORTHO05D002214 6.2e-13 79.0 200 30.0
Ciclev10030050m.g Citrus clementina HOM05D000106 ORTHO05D002214 1.8e-12 77.4 229 29.7
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 2.4e-12 77.0 206 31.1
MBI14_g36206_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 4.0e-12 76.3 213 27.7
DCAR_015587 Daucus carota HOM05D000106 ORTHO05D002214 5.3e-12 75.9 228 27.6
Hma1.2p1_0746F.1_g212330 Hydrangea macrophylla HOM05D000106 ORTHO05D002214 5.3e-12 75.9 231 32.0
SalBow3G0683 Salvia bowleyana HOM05D000106 ORTHO05D002214 5.3e-12 75.9 242 28.5
MBI14_g02604_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.2e-11 74.7 212 27.8
CDE09G0111 Ceratophyllum demersum HOM05D000106 ORTHO05D002214 2.0e-11 73.9 230 27.0
ECA247G0310 Erigeron canadensis HOM05D000106 ORTHO05D002214 2.0e-11 73.9 222 32.0
GSVIVG01025060001 Vitis vinifera HOM05D000106 ORTHO05D002214 2.0e-11 73.9 225 26.2
Cc01_g12090 Coffea canephora HOM05D000106 ORTHO05D002214 9.9e-11 71.6 219 29.2
HanXRQChr08g0229681 Helianthus annuus HOM05D000106 ORTHO05D002214 9.9e-11 71.6 234 30.3
TAR633G1252 Trochodendron aralioides HOM05D000106 ORTHO05D002214 9.9e-11 71.6 224 30.4
C06p09050 Brassica napus HOM05D000106 ORTHO05D002214 1.7e-10 70.9 233 26.6
Peaxi162Scf00411g00714 Petunia axillaris HOM05D000106 ORTHO05D002214 2.2e-10 70.5 220 28.2
SalBow3G1560 Salvia bowleyana HOM05D000106 ORTHO05D002214 2.2e-10 70.5 226 28.8
Cpa.g.sc252.8 Carica papaya HOM05D017111 ORTHO05D002214 2.9e-10 70.1 178 31.5
Lj2g0000167 Lotus japonicus HOM05D000106 ORTHO05D002214 2.9e-10 70.1 216 26.9
TAR369G1027 Trochodendron aralioides HOM05D000106 ORTHO05D002214 4.9e-10 69.3 223 26.5
Lj1A176T59 Lonicera japonica HOM05D000106 ORTHO05D002214 8.4e-10 68.6 228 28.9
Prupe.5G239900 Prunus persica HOM05D000106 ORTHO05D002214 8.4e-10 68.6 225 28.4
CiPaw.16G099100 Carya illinoinensis HOM05D000106 ORTHO05D002214 1.1e-09 68.2 216 28.2
HPP92_012462 Vanilla planifolia HOM05D000106 ORTHO05D002214 1.1e-09 68.2 241 26.1
Nitab4.5_0006523g0020 Nicotiana tabacum HOM05D000106 ORTHO05D002214 1.9e-09 67.4 232 28.9
Duzib168G1542 Durio zibethinus HOM05D000106 ORTHO05D002214 3.2e-09 66.6 224 27.7
Nn7g36478 Nelumbo nucifera HOM05D000106 ORTHO05D002214 3.2e-09 66.6 230 26.1
TAR623G1079 Trochodendron aralioides HOM05D000106 ORTHO05D002214 4.2e-09 66.2 238 27.3
THA.LOC104824984 Tarenaya hassleriana HOM05D000106 ORTHO05D000160 5.4e-09 65.9 210 27.1
Psat1g028840 Pisum sativum HOM05D000106 ORTHO05D002214 9.3e-09 65.1 217 28.1
Duzib168G1858 Durio zibethinus HOM05D000106 ORTHO05D002214 1.2e-08 64.7 215 26.5
Gohir.A08G000141 Gossypium hirsutum HOM05D000106 ORTHO05D002214 1.2e-08 64.7 245 29.4
ATR0759G053 Amborella trichopoda HOM05D000106 ORTHO05D002214 1.6e-08 64.3 147 35.4
THA.LOC104799454 Tarenaya hassleriana HOM05D000106 ORTHO05D002214 2.1e-08 63.9 227 27.3
TAR623G0638 Trochodendron aralioides HOM05D017111 ORTHO05D002214 3.5e-08 63.2 151 36.4
Mapoly0008s0165 Marchantia polymorpha HOM05D000106 ORTHO05D001887 4.6e-08 62.8 244 25.0
Migut.D02150 Erythranthe guttata HOM05D000106 ORTHO05D002214 6.0e-08 62.4 173 28.9
Gorai.004G003400 Gossypium raimondii HOM05D000106 ORTHO05D002214 6.0e-08 62.4 245 28.2
COL.COLO4_09241 Corchorus olitorius HOM05D000106 ORTHO05D002214 1.3e-07 61.2 177 27.1
PGR102G2327 Punica granatum HOM05D000106 ORTHO05D000160 1.7e-07 60.8 220 25.9
BcaC02g11035 Brassica carinata HOM05D000106 ORTHO05D000160 5.1e-07 59.3 226 27.4
Migut.N02651 Erythranthe guttata HOM05D000106 ORTHO05D002214 5.1e-07 59.3 226 24.3
RcHm_v2.0_Chr2g0092431 Rosa chinensis HOM05D000106 ORTHO05D000160 5.1e-07 59.3 232 23.7
Nn5g30160 Nelumbo nucifera HOM05D000106 ORTHO05D002214 6.6e-07 58.9 194 27.3
GSVIVG01016917001 Vitis vinifera HOM05D000106 ORTHO05D000160 1.1e-06 58.2 221 24.0
ClCG09G000440 Citrullus lanatus HOM05D000106 ORTHO05D000160 1.5e-06 57.8 228 23.7
DCAR_027183 Daucus carota HOM05D000106 ORTHO05D003154 1.5e-06 57.8 206 31.1
Eucgr.J02925 Eucalyptus grandis HOM05D000106 ORTHO05D000160 1.9e-06 57.4 221 27.6
Rhsim13G0088700 Rhododendron simsii HOM05D000106 ORTHO05D002214 2.5e-06 57.0 235 27.2
SEGI_24062 Sequoiadendron giganteum HOM05D000106 ORTHO05D002214 2.5e-06 57.0 171 29.2
BolC4t23716H Brassica oleracea HOM05D000106 ORTHO05D000160 3.3e-06 56.6 226 26.5
SEGI_00403 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 9.6e-06 55.1 170 28.8


User provided reference genes

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