Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 4.0e-102 374.8 190 100.0
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 5.7e-93 344.4 188 93.6
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.0e-82 309.3 193 86.0
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.1e-64 250.4 198 74.2
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 3.9e-41 172.2 189 56.6
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 8.7e-41 171.0 181 58.6
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 8.7e-41 171.0 181 58.6
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.5e-40 170.2 180 57.8
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 2.1e-39 166.4 183 55.2
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 2.1e-39 166.4 182 56.0
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.1e-39 166.4 194 57.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.2e-39 164.9 183 55.2
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 8.1e-39 164.5 180 56.1
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.4e-38 162.9 179 56.4
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 6.9e-38 161.4 182 54.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 6.9e-38 161.4 186 54.8
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.2e-37 160.6 182 55.5
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-37 160.2 205 49.3
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 2.0e-37 159.8 207 49.8
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 3.4e-37 159.1 180 52.8
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.0e-36 157.5 180 54.4
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.0e-36 157.5 183 55.2
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.9e-36 156.0 185 55.1
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.1e-35 154.1 181 54.1
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.2e-34 150.6 188 52.1
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.2e-34 150.6 189 52.9
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.7e-34 149.4 181 53.6
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.6e-34 148.7 184 52.7
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.0e-34 148.3 184 52.7
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.9e-34 147.9 183 55.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.3e-33 146.4 163 57.7
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 8.7e-33 144.4 181 52.5
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.1e-32 144.1 181 49.2
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.3e-32 142.5 212 47.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 5.7e-32 141.7 196 52.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.7e-32 141.7 184 50.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.3e-31 140.6 182 50.5
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.1e-31 139.8 189 49.7
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.8e-31 139.4 194 50.5
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.4e-30 137.1 189 48.1
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.8e-30 136.7 186 47.8
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.1e-30 136.0 184 51.1
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 3.1e-30 136.0 197 49.7
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 5.3e-30 135.2 191 50.3
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 4.5e-29 132.1 199 51.8
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 5.9e-29 131.7 160 54.4
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.6e-29 131.3 195 48.2
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 7.6e-29 131.3 177 49.7
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.0e-28 131.0 198 48.5
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 5.0e-28 128.6 161 51.6
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.5e-28 128.3 187 46.0
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 8.4e-28 127.9 163 52.1
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.1e-27 127.5 152 55.3
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.4e-27 127.1 194 50.0
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.2e-27 124.8 162 47.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 7.2e-27 124.8 187 47.1
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.1e-26 123.2 193 47.2
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.1e-26 123.2 188 47.3
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.6e-26 122.1 190 50.0
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 6.1e-26 121.7 159 49.7
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.1e-26 121.7 190 50.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.0e-25 120.9 191 45.0
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.3e-25 119.8 162 47.5
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.1e-25 118.6 161 46.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.5e-24 117.1 194 48.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-24 117.1 194 48.5
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-24 117.1 194 48.5
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-24 116.7 192 46.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.5e-24 116.3 153 49.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.6e-23 113.6 176 44.9
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.6e-23 113.6 152 52.0
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.6e-23 113.6 197 44.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.7e-23 112.5 199 47.2
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.2e-23 111.3 140 50.7
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-22 110.9 140 50.7
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.4e-22 109.8 189 42.9
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 4.1e-22 109.0 195 42.1
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.9e-22 108.2 152 48.7
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.0e-22 107.8 193 46.1
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-21 107.5 183 43.7
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.2e-21 107.5 170 45.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.5e-21 107.1 211 41.2
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 4.5e-21 105.5 152 50.0
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 4.5e-21 105.5 191 41.9
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 5.9e-21 105.1 166 42.8
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-20 104.4 215 40.5
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.3e-20 104.0 214 40.7
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.8e-20 102.4 216 40.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.1e-19 100.9 202 40.1
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-19 100.5 130 51.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 5.5e-19 98.6 193 37.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 7.2e-19 98.2 189 39.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 7.2e-19 98.2 105 53.3
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 9.4e-19 97.8 211 39.3
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 9.4e-19 97.8 211 39.3
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 3.6e-18 95.9 211 38.9
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 3.6e-18 95.9 211 38.9
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.6e-18 95.5 208 40.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.0e-17 94.4 211 37.4
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.4e-17 94.0 176 41.5
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.8e-17 93.6 165 44.8
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.9e-17 92.4 156 44.2
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.9e-17 92.4 211 39.3
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.1e-17 92.0 214 38.8
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.5e-16 90.5 211 36.5
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.5e-16 90.5 163 39.9
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.0e-16 90.1 228 36.0
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.0e-16 90.1 226 37.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.0e-16 90.1 189 38.1
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 2.0e-16 90.1 152 42.1
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 4.3e-16 89.0 163 41.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.7e-16 88.6 215 37.2
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 7.4e-16 88.2 209 37.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.7e-15 87.0 187 38.5
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.7e-15 87.0 189 40.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 1.7e-15 87.0 102 57.8
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 6.3e-15 85.1 165 40.6
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 8.2e-15 84.7 213 37.1
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.1e-14 84.3 99 52.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.1e-14 84.3 155 43.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.4e-14 84.0 186 36.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-14 84.0 212 34.0
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-14 83.6 203 37.9
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 3.1e-14 82.8 299 30.8
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 4.1e-14 82.4 173 39.9
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 9.1e-14 81.3 162 37.7
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.5e-13 80.5 257 28.4
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.0e-13 80.1 100 54.0
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 7.7e-13 78.2 200 37.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.9e-12 76.3 201 37.3
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 5.0e-12 75.5 127 40.2
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 8.5e-12 74.7 154 39.0
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.5e-12 74.7 163 38.0
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 8.5e-12 74.7 220 35.0
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 7.2e-11 71.6 170 35.3
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 9.4e-11 71.2 209 35.4
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 3.6e-10 69.3 106 45.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 4.7e-10 68.9 244 32.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.1e-10 68.6 295 25.8
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.0e-09 67.8 192 34.4
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-09 67.0 175 33.1
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.7e-09 65.1 295 25.1
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 8.8e-09 64.7 176 33.0
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-08 63.5 86 45.3
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.3e-07 58.5 99 43.4
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.1e-06 57.8 182 33.0
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 5.3e-06 55.5 96 45.8


User provided reference genes

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