Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 8.2e-238 826.6 407 100.0
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 5.7e-191 671.0 407 84.3
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 4.5e-188 661.4 407 82.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 4.4e-167 591.7 409 75.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 2.6e-143 512.7 407 65.1
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.6e-143 511.1 407 63.6
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.4e-141 506.9 405 64.0
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.2e-141 505.8 398 63.3
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.2e-141 505.4 405 64.2
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 7.1e-141 504.6 405 63.7
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.2e-140 503.8 409 64.1
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.1e-140 503.1 408 63.2
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 2.7e-140 502.7 408 64.5
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.6e-140 501.9 406 62.6
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.3e-139 499.6 404 62.9
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.0e-139 499.2 405 63.5
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.9e-139 498.8 405 63.7
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.7e-139 498.0 406 62.6
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 8.7e-139 497.7 405 62.7
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.9e-138 496.5 404 63.6
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 3.3e-138 495.7 406 61.8
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.3e-138 495.7 404 63.1
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.3e-138 495.4 404 62.4
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 4.3e-138 495.4 393 63.9
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.3e-137 493.8 402 63.2
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.6e-137 493.4 402 62.4
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 2.1e-137 493.0 402 62.9
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 2.8e-137 492.7 407 61.2
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.4e-136 490.3 404 63.1
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 2.4e-136 489.6 407 61.7
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 2.4e-136 489.6 408 60.5
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 2.4e-136 489.6 393 62.8
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.0e-136 488.8 407 63.6
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 9.0e-136 487.6 404 62.4
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.2e-135 487.3 406 61.1
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 2.6e-135 486.1 407 61.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 2.6e-135 486.1 408 61.5
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 3.4e-135 485.7 435 59.3
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.8e-135 485.0 407 60.4
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 7.6e-135 484.6 403 60.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.3e-134 483.8 404 62.6
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.7e-134 483.4 406 60.3
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.8e-134 482.3 406 61.3
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.4e-134 481.5 406 61.6
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.4e-134 481.1 406 60.3
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.1e-133 480.7 405 61.2
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.4e-133 480.3 408 59.6
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.9e-133 479.9 397 60.7
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 7.1e-133 478.0 405 58.5
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 7.1e-133 478.0 402 61.9
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.2e-132 477.2 405 60.7
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.6e-132 476.9 407 60.0
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.6e-132 476.9 409 59.9
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 4.6e-132 475.3 407 59.7
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 6.0e-132 474.9 402 60.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.0e-132 474.9 405 60.2
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.0e-131 474.2 405 60.2
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.3e-131 473.8 406 61.3
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.8e-131 473.4 405 60.7
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.3e-131 473.0 407 59.7
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-130 469.9 436 56.9
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 5.6e-130 468.4 406 60.6
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 7.4e-130 468.0 403 60.3
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 9.6e-130 467.6 406 57.6
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.6e-129 466.8 407 60.2
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 2.8e-129 466.1 404 58.7
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.8e-129 466.1 423 57.7
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.4e-128 463.8 394 60.7
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.4e-128 463.8 407 59.7
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 5.3e-128 461.8 409 58.9
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.3e-128 461.8 408 59.6
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 2.6e-127 459.5 404 58.9
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 7.6e-127 458.0 409 59.4
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 1.0e-126 457.6 406 58.9
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.3e-126 457.2 383 61.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.7e-126 456.8 388 60.6
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 2.9e-126 456.1 410 58.5
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 2.9e-126 456.1 410 58.5
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.1e-125 454.1 410 58.5
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.1e-124 449.9 360 62.5
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 2.1e-124 449.9 403 56.8
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 4.6e-124 448.7 403 57.6
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 7.9e-124 448.0 415 57.6
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.3e-123 446.4 409 57.5
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 5.1e-123 445.3 409 58.4
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 8.7e-123 444.5 405 57.5
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.9e-122 443.4 409 57.0
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 1.9e-122 443.4 405 56.8
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 2.5e-122 443.0 404 56.7
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.6e-121 440.3 401 56.4
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 2.2e-121 439.9 403 56.3
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 1.1e-120 437.6 349 62.8
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.4e-120 436.4 404 57.7
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 3.1e-120 436.0 340 64.7
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 5.3e-120 435.3 407 56.0
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.5e-119 433.7 398 56.5
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 2.0e-119 433.3 407 55.8
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 4.5e-119 432.2 383 57.2
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.2e-118 429.9 405 53.8
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.6e-116 423.7 403 56.8
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 1.1e-112 411.0 393 56.5
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.0e-107 394.4 384 52.9
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 9.7e-106 387.9 291 64.9
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 3.1e-104 382.9 305 61.6
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.8e-99 367.1 310 58.1
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.3e-99 366.7 310 57.7
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 5.2e-99 365.5 251 73.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 7.0e-96 355.1 361 51.2
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 7.0e-96 355.1 390 50.5
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 7.2e-93 345.1 384 50.0
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.0e-91 339.7 241 72.2
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 4.0e-91 339.3 241 70.1
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.5e-90 335.1 391 46.8
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.1e-88 329.3 242 69.4
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.3e-88 328.9 242 69.4
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 6.5e-86 322.0 238 68.1
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 2.5e-85 320.1 291 56.7
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.8e-80 303.9 391 43.7
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.7e-73 280.8 303 49.2
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 3.1e-59 233.4 232 54.3
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.7e-57 227.6 194 58.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.4e-56 224.6 196 59.7
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.3e-54 218.0 307 40.1
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.8e-52 210.3 224 50.0
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 5.6e-45 186.0 264 38.6
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 3.1e-43 180.3 248 42.7
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 5.1e-38 162.9 220 44.5
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 5.8e-26 122.9 79 73.4
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.7e-25 121.3 73 79.5
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.1e-16 92.0 57 66.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 3.9e-06 57.0 46 58.7


User provided reference genes

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