Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 8.6e-210 733.4 371 100.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 9.3e-148 527.3 307 89.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.1e-143 511.9 327 79.5
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.6e-139 498.4 248 97.6
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.9e-133 479.2 326 78.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.0e-106 391.0 245 75.1
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 7.0e-103 378.3 245 70.2
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.2e-102 377.5 246 72.8
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.6e-102 377.1 246 70.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.0e-102 376.7 245 71.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.7e-102 376.3 245 70.6
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.7e-102 376.3 247 70.4
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.3e-101 373.2 253 70.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.8e-101 372.5 245 69.4
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 9.5e-100 367.9 245 69.0
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.6e-99 367.1 240 70.8
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.8e-99 366.3 246 70.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.8e-99 366.3 246 70.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-98 364.4 246 70.3
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.0e-98 364.4 273 65.2
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.8e-98 363.6 247 68.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.8e-98 363.6 245 68.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.8e-98 363.6 246 70.3
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 5.2e-98 362.1 243 70.4
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 8.9e-98 361.3 245 69.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-97 360.9 246 69.1
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.2e-97 360.9 245 68.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.2e-97 360.9 248 68.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.0e-97 360.1 241 70.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.7e-96 357.1 245 69.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.2e-96 356.7 246 67.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.9e-96 356.3 253 66.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.7e-96 355.9 249 65.1
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 4.9e-96 355.5 245 66.9
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 6.4e-96 355.1 245 68.6
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 8.3e-96 354.8 246 69.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.1e-95 354.4 245 67.3
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.1e-95 352.4 280 61.1
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.2e-95 351.3 249 65.5
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.2e-94 350.9 249 64.7
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 2.7e-94 349.7 245 67.8
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 5.9e-94 348.6 245 66.9
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.8e-94 348.2 249 64.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 3.9e-93 345.9 244 67.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 3.9e-93 345.9 245 66.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 6.6e-93 345.1 247 67.6
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 6.6e-93 345.1 247 68.4
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.6e-91 340.5 247 66.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.6e-91 340.5 237 67.5
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.1e-91 340.1 245 65.7
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.1e-91 340.1 247 66.8
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.8e-90 337.0 259 63.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.8e-90 337.0 246 64.6
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.8e-90 337.0 246 64.6
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.3e-90 336.7 245 63.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.1e-90 336.3 252 63.1
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.1e-90 336.3 239 63.2
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 5.2e-90 335.5 243 64.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.2e-90 335.5 289 57.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 6.8e-90 335.1 365 49.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.5e-89 334.0 257 62.6
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 7.5e-89 331.6 245 64.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 6.4e-88 328.6 248 64.1
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.4e-88 328.6 270 59.3
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.4e-88 328.6 270 59.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 8.3e-88 328.2 248 64.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 8.3e-88 328.2 248 64.1
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.1e-87 327.8 281 58.0
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.1e-87 327.8 290 56.6
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.1e-87 325.9 247 65.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 5.4e-87 325.5 249 63.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 7.0e-87 325.1 250 62.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 6.0e-86 322.0 249 62.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.3e-85 320.9 249 62.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-84 317.8 245 62.9
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.5e-84 317.4 245 62.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.9e-84 317.0 247 64.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.9e-84 317.0 247 64.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 6.2e-83 312.0 317 51.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-82 311.2 240 61.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 5.2e-82 308.9 246 61.4
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 5.2e-82 308.9 246 61.4
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.6e-81 306.6 245 60.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.7e-80 303.9 252 57.9
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.9e-80 303.1 200 70.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 9.2e-79 298.1 247 60.3
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.6e-78 297.4 193 71.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.1e-78 297.0 247 59.9
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.7e-78 296.6 200 70.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.0e-77 293.1 207 69.1
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.9e-77 292.7 335 52.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.5e-76 290.0 243 58.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.1e-74 284.6 247 58.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.8e-74 283.9 196 66.3
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.8e-74 283.9 247 57.1
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.1e-74 283.1 236 60.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.2e-73 281.2 202 66.3
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.3e-72 277.7 193 67.9
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 3.8e-72 276.2 243 53.9
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.0e-69 266.5 197 64.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-68 263.5 251 52.6
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.6e-68 261.5 249 54.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.1e-67 260.4 252 52.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.1e-66 256.5 243 53.9
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 6.9e-66 255.4 249 53.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-65 254.6 255 55.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.3e-64 251.1 245 51.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.7e-64 250.8 255 55.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-64 249.2 253 55.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.4e-63 247.7 253 55.3
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.4e-63 246.9 247 55.1
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 7.8e-62 241.9 245 50.6
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-61 238.4 294 49.0
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.7e-61 238.4 239 51.9
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 5.6e-60 235.7 265 47.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.6e-60 235.7 337 41.5
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.4e-58 231.1 141 70.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 6.9e-58 228.8 263 51.3
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.5e-57 226.1 248 49.6
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.9e-56 223.4 325 41.5
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-53 214.9 202 54.0
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.1e-53 212.6 135 68.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.4e-50 203.8 287 45.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.4e-50 203.8 164 61.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 4.6e-46 189.5 240 44.2
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 6.0e-46 189.1 244 43.9
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-44 183.0 235 42.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.8e-43 180.3 212 46.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.4e-41 173.3 104 75.0
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-41 172.9 237 42.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.7e-40 171.0 243 39.1
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.6e-36 155.2 243 37.9
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.6e-35 154.5 242 38.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.7e-30 137.1 173 45.7
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.3e-28 130.2 232 34.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.3e-28 129.8 184 38.6
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.4e-26 124.0 196 39.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-22 111.7 138 39.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.1e-22 110.9 84 61.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-20 105.1 77 63.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.0e-20 104.4 286 26.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.5e-17 94.7 219 30.6
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.2e-16 90.9 131 39.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.9e-15 87.8 55 69.1
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.8e-13 81.3 158 34.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 5.2e-13 79.7 66 59.1
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.6e-12 77.4 112 41.1
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.3e-11 72.8 286 23.1
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.6e-09 68.2 168 34.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.0e-09 67.8 80 46.2
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.9e-09 66.2 166 29.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 3.8e-08 63.5 228 28.5
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 6.1e-06 56.2 70 45.7


User provided reference genes

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