Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.9e-148 528.1 266 100.0
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.5e-120 434.9 225 96.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.0e-104 382.9 225 84.9
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.8e-100 369.8 225 81.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.7e-87 326.6 237 75.1
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.0e-76 288.9 219 66.7
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 4.4e-75 285.4 232 64.2
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.8e-74 282.3 215 66.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 3.8e-74 282.3 188 71.8
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.4e-73 280.4 214 66.4
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.4e-73 280.4 180 75.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.4e-73 279.6 218 64.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.1e-73 278.9 207 67.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 5.4e-73 278.5 225 64.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 7.1e-73 278.1 218 65.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-72 277.3 227 63.4
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.1e-72 276.6 221 68.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.7e-72 276.2 193 71.5
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.5e-72 275.8 154 82.5
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.3e-71 273.9 225 61.8
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-71 273.9 222 64.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.3e-71 273.9 172 75.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.3e-71 273.9 222 65.3
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.9e-71 272.3 204 67.6
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.1e-71 271.9 229 62.4
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 8.6e-71 271.2 216 62.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.1e-70 270.8 165 77.0
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.5e-70 269.6 165 75.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.5e-70 269.6 224 61.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.3e-70 269.2 151 81.5
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 5.6e-70 268.5 221 64.7
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 9.6e-70 267.7 194 68.0
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.2e-69 267.3 204 66.7
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.8e-69 266.2 229 59.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.1e-68 264.2 173 72.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.1e-68 264.2 149 81.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.8e-68 263.5 216 63.9
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.4e-68 263.1 257 58.8
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.4e-68 263.1 230 62.6
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.2e-68 261.9 144 82.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 6.9e-68 261.5 219 61.2
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.9e-68 261.5 151 80.1
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 9.0e-68 261.2 149 80.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-67 259.2 151 77.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 3.4e-67 259.2 225 61.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-66 256.9 212 65.6
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-66 256.9 226 59.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.8e-66 255.8 226 61.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.4e-65 253.8 169 72.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.4e-65 253.8 168 70.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.4e-65 253.8 199 64.3
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.9e-65 253.4 237 56.1
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.9e-65 253.4 190 64.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.9e-65 253.4 164 72.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-65 253.1 189 69.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.2e-65 252.7 262 54.2
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.1e-65 251.5 210 60.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.3e-65 251.1 163 69.9
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.6e-64 250.4 190 66.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.7e-64 249.6 183 66.7
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.5e-64 249.2 216 62.5
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.6e-64 248.8 162 72.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.6e-64 248.8 215 58.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 4.6e-64 248.8 161 73.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.0e-64 248.4 164 71.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 6.0e-64 248.4 169 71.6
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 7.8e-64 248.1 213 61.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 7.8e-64 248.1 183 67.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.3e-63 247.3 172 69.2
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.3e-63 247.3 211 60.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.0e-63 246.1 210 58.6
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.1e-63 245.4 257 52.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.1e-63 245.4 147 74.8
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.3e-62 242.7 203 62.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-61 240.7 234 57.7
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.8e-61 239.6 224 54.9
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.8e-61 239.6 197 64.0
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.6e-61 239.2 158 71.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.1e-61 238.0 157 73.9
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.4e-60 237.3 141 77.3
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.4e-60 236.5 231 56.3
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 9.0e-60 234.6 178 66.3
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.2e-59 234.2 182 61.5
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.2e-59 234.2 164 66.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-59 233.8 137 76.6
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.4e-59 232.6 178 66.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.5e-59 232.3 258 51.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.3e-58 230.7 195 61.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 8.4e-58 228.0 162 69.8
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.4e-57 226.5 181 61.3
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.4e-57 225.3 201 58.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.6e-56 223.8 196 62.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.8e-55 220.3 215 55.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.3e-55 219.9 148 66.2
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.0e-55 219.5 273 48.4
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.0e-55 219.5 129 78.3
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.1e-55 218.8 231 51.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 6.7e-55 218.4 225 51.6
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.6e-54 215.3 233 51.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.8e-53 213.0 235 50.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.8e-53 213.0 235 50.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 4.8e-53 212.2 257 49.8
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.2e-53 211.8 234 51.7
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.2e-53 211.8 149 65.8
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.9e-52 208.4 151 64.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 6.9e-52 208.4 179 58.1
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.0e-51 206.8 182 58.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.0e-51 206.8 148 66.9
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.3e-50 204.1 220 52.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-50 203.8 137 70.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.4e-50 201.4 146 61.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 8.4e-50 201.4 202 53.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.4e-49 200.7 150 58.7
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.9e-49 200.3 146 60.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.2e-49 199.1 208 51.9
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.1e-48 196.8 207 47.3
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.5e-48 196.1 144 59.7
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.0e-48 195.3 152 64.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.0e-47 194.5 144 58.3
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.1e-47 192.2 218 48.2
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 6.7e-47 191.8 144 57.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 4.3e-46 189.1 144 56.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 4.3e-46 189.1 144 56.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.6e-46 188.0 142 57.7
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-45 187.2 144 55.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.6e-45 187.2 144 55.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.8e-45 186.4 150 56.0
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.8e-45 185.7 109 77.1
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 6.2e-45 185.3 187 54.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.2e-45 184.9 144 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.8e-44 183.7 142 55.6
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.0e-44 182.6 144 54.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.0e-44 182.6 144 54.9
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.0e-44 182.6 137 66.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.2e-42 176.8 98 80.6
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 2.9e-42 176.4 137 59.1
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-40 169.9 121 59.5
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.5e-40 169.5 243 43.6
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.7e-39 165.2 147 45.6
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.5e-38 164.1 91 75.8
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.7e-38 161.4 91 75.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 4.1e-36 156.0 126 53.2
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.5e-35 154.1 111 63.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.4e-35 152.9 133 57.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 4.5e-35 152.5 118 64.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.9e-34 149.8 120 61.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.1e-33 147.9 177 46.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.5e-33 146.7 144 54.9
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.6e-32 142.5 176 45.5
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.6e-32 142.5 145 46.9
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.9e-30 137.1 147 43.5
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.8e-29 133.3 144 54.2
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 8.2e-29 131.7 64 89.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.0e-27 127.1 150 48.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 8.5e-26 121.7 151 45.7
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-25 120.6 153 43.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.2e-24 117.9 140 40.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 7.9e-24 115.2 64 76.6
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.4e-20 104.4 157 42.0
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 3.2e-17 93.2 57 78.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.3e-14 83.2 107 46.7
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 9.7e-14 81.6 66 59.1
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 3.7e-13 79.7 85 49.4
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 3.5e-11 73.2 58 60.3
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-09 67.4 116 38.8
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 4.2e-09 66.2 94 41.5
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 9.4e-09 65.1 43 60.5
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 9.4e-09 65.1 94 40.4


User provided reference genes

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