Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.8e-152 542.7 305 100.0
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 3.1e-141 505.4 303 84.5
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.3e-115 420.2 305 75.7
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 4.3e-90 335.5 307 63.5
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.8e-72 276.9 303 53.5
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 1.5e-50 204.1 320 40.6
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 6.3e-49 198.7 315 39.4
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.4e-48 196.8 310 40.6
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.2e-47 194.5 312 37.8
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 1.3e-46 191.0 312 38.1
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.5e-46 188.7 312 38.8
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 1.1e-45 188.0 306 38.9
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.9e-45 187.2 311 37.9
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 2.1e-44 183.7 304 36.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 2.1e-44 183.7 309 39.2
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.6e-44 183.0 312 37.8
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.3e-43 181.0 311 37.6
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 8.7e-43 178.3 331 34.7
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.9e-42 177.2 257 42.0
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.7e-41 174.1 277 36.8
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 3.7e-41 172.9 300 38.3
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 2.4e-40 170.2 309 36.6
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 4.1e-40 169.5 315 36.8
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 4.1e-40 169.5 315 36.8
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 5.3e-40 169.1 316 37.0
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.5e-39 167.5 299 35.8
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 2.6e-39 166.8 316 36.1
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 3.4e-39 166.4 316 33.9
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 5.9e-39 165.6 316 33.9
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 7.7e-39 165.2 308 33.4
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 7.7e-39 165.2 313 38.0
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 1.0e-38 164.9 295 36.9
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 1.9e-37 160.6 310 34.2
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 1.9e-37 160.6 299 37.8
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 3.2e-37 159.8 313 36.7
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 4.6e-36 156.0 312 32.4
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 6.1e-36 155.6 308 31.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 7.9e-36 155.2 340 31.2
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 1.0e-35 154.8 302 34.4
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.8e-35 154.1 300 37.3
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 3.0e-35 153.3 315 36.8
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.9e-35 152.9 256 38.3
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 8.8e-35 151.8 300 35.3
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.1e-34 151.4 256 37.5
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.5e-34 151.0 260 36.5
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.5e-34 151.0 275 34.9
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 5.7e-34 149.1 252 39.7
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.3e-33 147.9 257 38.5
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 1.3e-33 147.9 281 34.5
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 2.2e-33 147.1 310 34.8
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.7e-33 146.4 305 35.4
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 8.2e-33 145.2 319 35.4
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.1e-32 144.8 309 32.4
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.1e-32 144.8 299 36.8
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.1e-32 143.3 285 36.1
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 4.1e-32 142.9 322 33.9
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.0e-31 140.6 305 33.1
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 5.9e-31 139.0 328 31.4
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.3e-30 137.9 311 29.6
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.7e-30 137.5 243 37.0
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 2.9e-30 136.7 314 30.3
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 6.5e-30 135.6 308 29.5
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.9e-29 134.0 312 29.8
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 3.2e-29 133.3 314 35.0
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 7.2e-29 132.1 306 30.1
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 7.2e-29 132.1 313 32.9
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.2e-29 132.1 299 28.8
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.2e-29 132.1 299 28.8
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 7.2e-29 132.1 308 33.1
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 9.4e-29 131.7 312 30.4
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 1.2e-28 131.3 237 36.3
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.6e-28 131.0 310 33.9
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 2.1e-28 130.6 318 29.6
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 6.1e-28 129.0 290 33.1
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.0e-27 128.3 284 32.7
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 1.0e-27 128.3 303 30.4
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 5.2e-27 125.9 307 30.6
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 6.7e-27 125.6 295 29.5
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 8.8e-27 125.2 303 25.4
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 4.4e-26 122.9 310 31.6
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 7.4e-26 122.1 293 32.4
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.7e-25 120.9 300 31.3
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 2.8e-25 120.2 272 32.4
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 6.3e-25 119.0 223 32.3
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.1e-24 116.3 305 31.5
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 1.2e-23 114.8 170 36.5
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.6e-23 114.4 283 30.7
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.6e-23 114.4 307 29.0
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 2.0e-23 114.0 247 33.6
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 4.5e-23 112.8 305 30.8
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 5.9e-23 112.5 259 25.9
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 5.0e-22 109.4 285 29.5
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 2.3e-19 100.5 191 37.2
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 8.8e-19 98.6 281 27.4
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 4.1e-16 89.7 308 29.9
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 2.7e-15 87.0 233 29.2
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 1.0e-14 85.1 302 24.8
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 2.2e-14 84.0 143 35.7
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 6.5e-14 82.4 124 38.7
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 6.5e-14 82.4 124 38.7
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.9e-13 80.9 83 45.8
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 3.2e-13 80.1 102 42.2
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 3.2e-13 80.1 158 32.3
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.1e-12 77.4 160 33.1
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 3.6e-12 76.6 153 32.0
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 7.5e-10 68.9 312 24.0
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.7e-09 67.8 185 33.5
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 2.2e-09 67.4 264 25.8
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.3e-09 65.9 122 36.9
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 3.1e-08 63.5 255 25.1
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 4.1e-08 63.2 124 34.7
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 4.1e-08 63.2 113 34.5
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 5.4e-08 62.8 317 22.4
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 2.0e-07 60.8 308 23.4
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 3.5e-07 60.1 316 22.2
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 4.5e-07 59.7 105 37.1
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 7.7e-07 58.9 107 35.5
Zm00001eb043640 Zea mays HOM05D002440 ORTHO05D002576 7.7e-07 58.9 255 24.3
Ciclev10020322m.g Citrus clementina HOM05D002440 ORTHO05D002576 1.3e-06 58.2 306 24.5
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.7e-06 57.8 251 25.1
Medtr7g078700 Medicago truncatula HOM05D002440 ORTHO05D002576 1.7e-06 57.8 310 22.9
PGR031G3124 Punica granatum HOM05D002440 ORTHO05D002576 1.7e-06 57.8 312 23.4
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 2.3e-06 57.4 115 33.0
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 2.3e-06 57.4 122 32.0
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 2.3e-06 57.4 122 32.0
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 2.9e-06 57.0 115 32.2
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 3.8e-06 56.6 107 34.6
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 3.8e-06 56.6 107 34.6
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 3.8e-06 56.6 107 34.6
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 3.8e-06 56.6 107 34.6
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 3.8e-06 56.6 251 25.5
Sed0022066 Sechium edule HOM05D002440 ORTHO05D002576 3.8e-06 56.6 116 35.3
THA.LOC104802045 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 5.0e-06 56.2 299 23.4
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 6.5e-06 55.8 249 23.7
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 6.5e-06 55.8 311 22.5
ClCG05G001350 Citrullus lanatus HOM05D002440 ORTHO05D002576 6.5e-06 55.8 116 35.3
AL4G45310 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 8.6e-06 55.5 115 34.8
A04p34270 Brassica napus HOM05D002440 ORTHO05D002576 8.6e-06 55.5 166 28.3


User provided reference genes

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