Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 3.5e-52 208.0 105 100.0
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 1.2e-39 166.4 105 85.7
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 5.3e-32 141.0 140 60.7
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 5.3e-32 141.0 109 71.6
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 1.8e-27 125.9 102 66.7
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 1.8e-27 125.9 102 66.7
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 1.8e-27 125.9 103 68.9
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 4.0e-27 124.8 102 62.7
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 4.0e-27 124.8 102 64.7
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 5.2e-27 124.4 93 68.8
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 5.2e-27 124.4 93 68.8
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 8.8e-27 123.6 104 62.5
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 2.6e-26 122.1 102 65.7
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 2.6e-26 122.1 103 65.0
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 3.3e-26 121.7 102 63.7
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 3.3e-26 121.7 102 65.7
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 4.4e-26 121.3 104 63.5
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 5.7e-26 120.9 102 63.7
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 5.7e-26 120.9 102 63.7
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 5.7e-26 120.9 102 63.7
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 5.7e-26 120.9 104 64.4
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 7.5e-26 120.6 103 63.1
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 7.5e-26 120.6 93 68.8
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 1.3e-25 119.8 102 61.8
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 1.3e-25 119.8 102 61.8
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 1.7e-25 119.4 103 64.1
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 1.7e-25 119.4 105 62.9
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 1.7e-25 119.4 103 62.1
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 2.2e-25 119.0 94 67.0
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 2.8e-25 118.6 105 63.8
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 2.8e-25 118.6 100 62.0
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 2.8e-25 118.6 99 63.6
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 2.8e-25 118.6 105 61.9
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 3.7e-25 118.2 99 61.6
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 3.7e-25 118.2 99 61.6
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 3.7e-25 118.2 99 61.6
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 3.7e-25 118.2 102 62.7
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 3.7e-25 118.2 101 61.4
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 3.7e-25 118.2 103 63.1
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 4.8e-25 117.9 93 65.6
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 4.8e-25 117.9 93 65.6
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 8.2e-25 117.1 98 64.3
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 8.2e-25 117.1 98 64.3
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.4e-24 116.3 104 63.5
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 3.1e-24 115.2 104 58.7
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 3.1e-24 115.2 155 44.5
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 3.1e-24 115.2 155 44.5
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 3.1e-24 115.2 105 60.0
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 4.1e-24 114.8 91 64.8
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 4.1e-24 114.8 102 61.8
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 4.1e-24 114.8 105 60.0
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 7.0e-24 114.0 105 61.0
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 9.1e-24 113.6 101 60.4
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 1.6e-23 112.8 103 61.2
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 2.0e-23 112.5 104 62.5
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 3.5e-23 111.7 103 61.2
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 5.9e-23 110.9 102 60.8
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 5.9e-23 110.9 91 64.8
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 7.7e-23 110.5 102 58.8
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 7.7e-23 110.5 102 58.8
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 7.7e-23 110.5 101 59.4
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 1.0e-22 110.2 104 59.6
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 1.3e-22 109.8 99 57.6
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 1.3e-22 109.8 99 57.6
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 1.3e-22 109.8 99 57.6
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 2.2e-22 109.0 99 60.6
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 5.0e-22 107.8 99 56.6
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 5.0e-22 107.8 99 56.6
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 5.0e-22 107.8 124 50.8
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 8.5e-22 107.1 105 57.1
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 8.5e-22 107.1 103 57.3
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 1.1e-21 106.7 99 57.6
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 1.5e-21 106.3 94 60.6
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 1.9e-21 105.9 92 60.9
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 1.9e-21 105.9 99 56.6
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 1.9e-21 105.9 99 56.6
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 1.9e-21 105.9 104 57.7
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 2.5e-21 105.5 99 59.6
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 2.5e-21 105.5 99 58.6
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 2.5e-21 105.5 99 56.6
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 2.5e-21 105.5 104 57.7
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 3.2e-21 105.1 102 57.8
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 4.2e-21 104.8 99 58.6
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 4.2e-21 104.8 104 57.7
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 5.5e-21 104.4 103 57.3
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 1.6e-20 102.8 103 55.3
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 1.6e-20 102.8 103 55.3
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 2.1e-20 102.4 103 55.3
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 3.6e-20 101.7 103 58.3
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 3.6e-20 101.7 99 54.5
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 8.0e-20 100.5 99 53.5
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 2.3e-19 99.0 105 55.2
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 2.3e-19 99.0 93 58.1
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 1.5e-18 96.3 189 36.5
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 8.3e-17 90.5 85 57.6
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 1.1e-16 90.1 129 45.7
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.8e-16 89.4 91 58.2
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 2.9e-14 82.0 48 83.3
Medtr4g101060 Medicago truncatula HOM05D007133 ORTHO05D008954 1.1e-13 80.1 73 57.5
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 1.5e-13 79.7 48 75.0
Dinv09304 Davidia involucrata HOM05D007133 ORTHO05D008954 2.5e-13 79.0 102 50.0
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 3.2e-13 78.6 49 75.5
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 4.2e-13 78.2 48 77.1
AagrBONN_evm.TU.Sc2ySwM_344.2738 Anthoceros agrestis HOM05D007133 ORTHO05D008954 7.2e-13 77.4 95 49.5
Pp3c9_17680 Physcomitrium patens HOM05D007133 ORTHO05D008954 4.7e-12 74.7 99 48.5
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 1.0e-11 73.6 48 75.0
Mapoly0049s0103 Marchantia polymorpha HOM05D007133 ORTHO05D008954 2.0e-10 69.3 93 47.3
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 5.7e-10 67.8 48 66.7
HPP92_001020 Vanilla planifolia HOM05D007133 ORTHO05D008954 1.7e-09 66.2 80 47.5
Cc00_g26940 Coffea canephora HOM05D007133 ORTHO05D008954 9.2e-08 60.5 48 64.6
Rhsim01G0126100 Rhododendron simsii HOM05D007133 ORTHO05D008954 5.9e-07 57.8 41 73.2


User provided reference genes

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