Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.4e-30 134.4 93 100.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.2e-22 109.8 96 68.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 8.9e-15 83.6 86 55.8
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.7e-13 79.3 93 67.7
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 3.0e-10 68.6 32 87.5
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 6.6e-10 67.4 92 50.0
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.5e-09 65.5 32 84.4
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 5.6e-09 64.3 32 84.4
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 5.6e-09 64.3 32 81.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 5.6e-09 64.3 32 81.2
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 5.6e-09 64.3 32 84.4
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 5.6e-09 64.3 91 40.7
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 5.6e-09 64.3 32 81.2
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.3e-09 63.9 32 81.2
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.3e-09 63.9 32 81.2
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.3e-09 63.9 32 81.2
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 7.3e-09 63.9 32 81.2
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 84.4
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 9.6e-09 63.5 30 86.7
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 84.4
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 84.4
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 81.2
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 81.2
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 81.2
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 9.6e-09 63.5 32 81.2
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.3e-08 63.2 32 81.2
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.3e-08 63.2 92 38.0
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.3e-08 63.2 32 81.2
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.3e-08 63.2 32 81.2
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.3e-08 63.2 32 78.1
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.6e-08 62.8 32 84.4
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-08 62.8 92 38.0
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.6e-08 62.8 69 44.9
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 78.1
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 81.2
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 2.1e-08 62.4 30 83.3
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 81.2
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 2.1e-08 62.4 93 47.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 81.2
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 81.2
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 2.1e-08 62.4 32 78.1
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 78.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 75.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 75.0
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 75.0
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 78.1
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 78.1
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.8e-08 62.0 32 81.2
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.8e-08 62.0 31 80.6
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 75.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 81.2
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 3.6e-08 61.6 30 86.7
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 78.1
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 75.0
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 81.2
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 78.1
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.6e-08 61.6 32 78.1
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.8e-08 61.2 32 75.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.8e-08 61.2 32 75.0
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 78.1
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 75.0
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 75.0
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 71.9
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 6.2e-08 60.8 32 75.0
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 75.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 75.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 75.0
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 78.1
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 78.1
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 78.1
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 78.1
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 8.1e-08 60.5 32 75.0
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.1e-07 60.1 32 75.0
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-07 60.1 32 75.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-07 60.1 32 75.0
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.1e-07 60.1 30 83.3
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.4e-07 59.7 32 75.0
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.4e-07 59.7 31 77.4
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.4e-07 59.7 32 78.1
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.4e-07 59.7 30 83.3
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.4e-07 59.7 32 75.0
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.4e-07 59.7 32 75.0
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.8e-07 59.3 30 76.7
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.8e-07 59.3 32 75.0
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.4e-07 58.9 32 75.0
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.4e-07 58.9 32 78.1
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.4e-07 58.9 28 82.1
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.4e-07 58.9 32 78.1
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.4e-07 58.9 31 77.4
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.4e-07 58.9 32 75.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 2.4e-07 58.9 32 78.1
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.1e-07 58.5 31 74.2
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.1e-07 58.5 32 71.9
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 3.1e-07 58.5 32 68.8
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.0e-07 58.2 30 76.7
Lalb_Chr25g0282781 Lupinus albus HOM05D003654 ORTHO05D004176 4.0e-07 58.2 34 76.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.3e-07 57.8 32 68.8
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 5.3e-07 57.8 30 76.7
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 5.3e-07 57.8 32 75.0
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.3e-07 57.8 30 80.0
Lalb_Chr25g0282791 Lupinus albus HOM05D003654 ORTHO05D004176 5.3e-07 57.8 34 76.5
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 6.9e-07 57.4 30 76.7
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 6.9e-07 57.4 30 76.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 6.9e-07 57.4 30 76.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 6.9e-07 57.4 30 80.0
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 9.0e-07 57.0 32 65.6
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 9.0e-07 57.0 30 76.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 9.0e-07 57.0 30 76.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.0e-07 57.0 32 71.9
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 9.0e-07 57.0 30 76.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 9.0e-07 57.0 32 68.8
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-06 56.6 30 73.3
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 1.2e-06 56.6 32 75.0
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 1.2e-06 56.6 32 75.0
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 71.9
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 71.9
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.5e-06 56.2 31 74.2
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 71.9
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 81.2
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 68.8
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 68.8
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.5e-06 56.2 32 71.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 2.0e-06 55.8 32 78.1
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 2.0e-06 55.8 30 73.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 2.0e-06 55.8 30 73.3
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 2.6e-06 55.5 30 73.3
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 2.6e-06 55.5 31 74.2
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.6e-06 55.5 29 79.3
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 2.6e-06 55.5 32 71.9
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.4e-06 55.1 30 70.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.4e-06 55.1 30 73.3
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.4e-06 55.1 32 68.8
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 3.4e-06 55.1 29 79.3
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.4e-06 54.7 32 68.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.4e-06 54.7 30 70.0
Medtr3g032740 Medicago truncatula HOM05D003654 ORTHO05D004176 5.8e-06 54.3 32 71.9
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 9.9e-06 53.5 30 70.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.9e-06 53.5 32 75.0


User provided reference genes

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