Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.7e-119 432.2 243 100.0
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 4.1e-112 408.3 252 92.5
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 2.7e-103 379.0 244 89.8
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 3.3e-101 372.1 310 73.9
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 3.9e-94 348.6 246 79.7
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 6.6e-94 347.8 246 78.0
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.5e-93 346.7 246 78.9
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 4.8e-92 341.7 246 81.3
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 8.1e-92 340.9 248 80.2
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 3.4e-90 335.5 247 78.1
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 4.5e-90 335.1 245 75.9
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 2.9e-89 332.4 244 67.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 8.4e-89 330.9 241 74.3
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.4e-88 329.3 250 78.8
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 5.4e-88 328.2 247 71.3
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 9.3e-88 327.4 254 75.2
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.6e-87 326.6 277 69.0
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 2.1e-87 326.2 246 74.8
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 2.1e-87 326.2 245 77.1
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.1e-87 326.2 247 78.1
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 4.6e-87 325.1 247 67.6
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.0e-86 323.9 246 74.8
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.3e-86 323.6 179 87.2
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.3e-86 323.6 179 84.9
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 2.3e-86 322.8 243 71.6
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 2.3e-86 322.8 245 74.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.3e-86 322.8 249 72.7
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 3.9e-86 322.0 257 64.6
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 6.7e-86 321.2 179 84.9
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 6.7e-86 321.2 247 76.1
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 8.7e-86 320.9 250 77.6
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 8.7e-86 320.9 247 76.9
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.5e-85 320.1 178 85.4
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.9e-85 319.7 248 76.6
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.3e-85 318.9 248 74.2
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.3e-85 318.9 179 84.9
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 4.3e-85 318.5 179 85.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 9.6e-85 317.4 178 84.8
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 9.6e-85 317.4 249 72.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 2.8e-84 315.8 179 83.2
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 3.7e-84 315.5 179 83.2
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 6.2e-84 314.7 249 77.1
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.4e-83 313.5 243 65.0
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.1e-83 312.4 179 81.0
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 5.3e-83 311.6 179 82.1
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.5e-82 310.1 179 79.9
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 3.4e-82 308.9 242 71.5
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 3.4e-82 308.9 279 63.1
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 3.4e-82 308.9 249 74.7
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 2.2e-81 306.2 241 75.1
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 2.2e-81 306.2 179 79.3
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.2e-81 306.2 300 61.3
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 2.9e-81 305.8 243 71.2
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 2.9e-81 305.8 275 69.8
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.4e-81 304.7 210 70.0
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 6.4e-81 304.7 179 78.8
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 8.4e-81 304.3 243 72.8
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.1e-80 303.9 179 78.8
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.4e-80 303.5 243 72.0
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.4e-80 303.5 263 70.7
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 4.2e-80 302.0 179 77.1
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 5.5e-80 301.6 279 57.0
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.2e-79 300.4 256 62.1
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 2.7e-79 299.3 168 82.1
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.6e-79 298.5 300 54.7
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.0e-78 297.4 242 68.6
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.3e-78 297.0 275 61.5
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.8e-78 296.6 242 69.4
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.8e-78 296.6 242 68.6
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 3.0e-78 295.8 242 68.6
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 3.9e-78 295.4 243 69.1
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 8.7e-78 294.3 160 84.4
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.1e-77 293.9 272 64.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 2.1e-76 289.7 249 65.9
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-76 289.7 170 81.2
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.1e-76 289.7 179 75.4
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.8e-76 289.3 169 81.7
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.3e-73 280.4 271 57.6
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 6.5e-73 278.1 167 77.2
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 8.4e-73 277.7 246 67.9
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 4.6e-71 271.9 212 64.6
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.3e-70 269.6 306 54.9
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.7e-70 268.1 193 69.4
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.1e-67 260.8 150 83.3
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 9.0e-67 257.7 145 82.8
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 2.0e-66 256.5 161 75.8
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 3.4e-66 255.8 146 80.8
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.7e-65 253.4 151 77.5
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 2.9e-65 252.7 179 64.2
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 1.0e-62 244.2 180 63.3
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.4e-62 243.8 184 65.8
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 8.8e-62 241.1 248 60.9
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 9.7e-61 237.7 196 62.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 7.7e-58 228.0 263 48.3
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 3.8e-57 225.7 281 58.7
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.9e-56 223.4 187 65.2
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 3.2e-56 222.6 398 37.7
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 7.2e-56 221.5 125 84.0
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.4e-54 217.2 342 40.1
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 3.9e-54 215.7 169 81.1
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.1e-51 205.7 131 74.8
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 5.9e-50 201.8 154 66.2
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 7.7e-50 201.4 186 51.6
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.3e-44 184.1 115 75.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.6e-39 167.2 117 65.8
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.0e-38 162.5 113 67.3
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 2.6e-37 159.8 145 59.3
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 3.4e-37 159.5 98 75.5
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 1.2e-29 134.4 81 76.5
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 7.0e-27 125.2 107 61.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 3.5e-26 122.9 165 63.6
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 4.0e-22 109.4 112 54.5
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.5e-18 95.9 119 60.5
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 5.6e-08 62.4 35 80.0
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 7.3e-08 62.0 34 79.4
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.1e-07 60.5 34 79.4
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 1.8e-06 57.4 29 89.7


User provided reference genes

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