Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.4e-230 802.7 439 100.0
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.1e-171 607.1 350 92.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.8e-156 555.4 351 84.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.0e-124 448.7 356 71.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.9e-87 325.9 355 56.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.4e-86 324.3 354 54.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.6e-76 288.5 366 50.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 7.3e-75 285.4 367 50.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 6.8e-73 278.9 357 49.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.3e-71 274.6 353 48.7
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 3.8e-71 273.1 360 49.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 6.4e-71 272.3 371 49.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 8.4e-71 271.9 356 48.3
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.9e-70 270.8 368 48.1
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.4e-70 270.4 362 47.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-69 266.9 372 47.6
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-68 264.2 366 48.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.3e-68 263.8 369 46.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.5e-67 260.4 364 48.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.3e-67 260.0 352 46.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.3e-67 259.6 373 48.5
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.6e-67 259.2 384 45.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 7.3e-67 258.8 392 43.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.1e-66 257.3 369 47.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.8e-66 256.9 397 43.3
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.6e-66 256.5 369 47.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 8.1e-66 255.4 375 46.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 6.9e-65 252.3 336 48.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.7e-63 247.7 394 42.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.9e-63 246.1 362 46.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 4.9e-63 246.1 364 45.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.4e-63 245.7 368 44.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.4e-63 245.7 372 46.8
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-62 245.0 400 45.0
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.2e-62 243.4 406 41.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.1e-62 242.3 368 45.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 9.3e-62 241.9 405 41.5
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 9.3e-62 241.9 368 46.7
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.6e-61 241.1 378 44.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-61 239.6 405 41.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 7.9e-61 238.8 370 44.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.0e-60 238.4 404 42.3
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.3e-60 238.0 377 42.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.7e-60 237.7 416 41.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.0e-60 236.9 405 41.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.7e-60 235.3 365 45.5
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.5e-59 234.6 383 45.2
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.5e-59 234.6 368 44.3
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.5e-59 233.8 378 42.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.6e-59 231.9 370 41.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.6e-58 231.1 371 45.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-58 231.1 406 41.1
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.1e-58 230.7 404 43.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.0e-57 226.5 385 41.8
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.2e-56 224.9 402 39.3
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.8e-56 222.6 371 43.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 9.9e-56 221.9 341 41.9
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 4.9e-55 219.5 364 43.7
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.9e-54 217.6 321 45.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-54 217.6 373 39.7
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-54 217.6 373 39.7
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.2e-54 216.9 381 43.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.1e-53 214.2 382 43.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.5e-53 213.4 377 40.6
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 7.9e-53 212.2 376 40.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.0e-52 211.8 337 40.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-52 211.5 268 50.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-52 211.1 317 44.5
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.9e-52 209.9 380 42.9
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.9e-52 209.9 391 37.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.7e-52 209.1 360 40.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.5e-51 208.0 371 39.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.5e-51 208.0 326 44.2
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.3e-50 204.9 337 39.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.1e-49 201.8 368 41.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-49 201.8 362 41.2
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.4e-49 201.4 378 37.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.0e-49 199.9 359 39.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 6.9e-49 199.1 363 39.4
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.0e-49 198.7 326 41.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.4e-48 196.8 379 39.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.0e-47 195.3 369 39.8
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.0e-47 195.3 375 39.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.0e-47 195.3 381 38.3
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.4e-46 191.4 383 37.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.4e-46 191.4 372 38.7
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.5e-46 190.7 262 44.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.6e-45 188.0 343 39.1
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.7e-45 187.2 393 37.4
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.7e-45 187.2 356 38.2
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.5e-45 186.8 356 38.2
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 7.9e-45 185.7 320 39.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.3e-44 184.9 357 38.1
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.1e-43 181.8 366 39.6
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.9e-43 181.0 365 37.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.5e-43 180.6 360 37.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 7.4e-43 179.1 390 36.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 9.6e-43 178.7 388 36.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-42 177.9 350 38.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.1e-41 175.3 364 36.8
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.8e-41 174.5 345 38.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.1e-41 173.7 243 51.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 5.3e-41 172.9 350 38.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.3e-41 172.9 349 38.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 5.3e-41 172.9 350 38.0
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.0e-41 172.2 349 38.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 9.0e-41 172.2 289 41.9
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-37 161.0 369 36.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.9e-37 159.1 369 35.8
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 7.9e-37 159.1 369 35.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.6e-34 151.4 365 34.8
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 4.1e-33 146.7 188 45.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.5e-32 144.8 223 43.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 3.4e-32 143.7 219 42.5
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.2e-31 141.0 189 47.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.8e-31 140.2 229 39.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 3.8e-31 140.2 393 31.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.8e-31 140.2 357 34.5
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.5e-30 137.5 230 38.7
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.6e-29 133.7 363 33.3
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-29 132.9 336 34.2
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.0e-28 132.1 350 30.9
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.4e-28 131.7 357 33.6
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.8e-28 131.3 257 34.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.8e-28 131.3 222 39.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 6.7e-28 129.4 241 35.3
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.5e-27 128.3 215 38.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 7.4e-27 125.9 217 37.8
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.4e-27 125.9 221 36.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.3e-26 125.2 238 34.9
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 2.8e-26 124.0 223 39.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.3e-26 122.9 265 33.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.1e-25 122.1 207 39.1
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.1e-25 122.1 408 30.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.1e-25 120.6 381 32.3
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 9.1e-25 119.0 234 42.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 9.1e-25 119.0 224 36.2
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.4e-24 117.1 372 32.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.0e-23 115.5 257 35.0
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.7e-23 114.8 247 35.2
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-23 114.4 225 33.3
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.9e-23 114.0 248 33.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.9e-22 111.3 366 31.7
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.5e-22 110.9 235 32.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 9.4e-22 109.0 364 30.5
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-21 108.6 208 34.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.7e-21 107.5 201 39.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 7.9e-21 105.9 246 37.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 7.9e-21 105.9 228 35.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.0e-20 105.5 232 36.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-20 105.1 241 34.0
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 3.0e-20 104.0 205 35.6
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.1e-20 103.2 221 34.4
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-17 94.4 60 61.7
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.1e-17 94.0 246 32.1
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.3e-17 93.2 60 58.3
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.2e-16 92.0 110 40.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.2e-16 92.0 110 40.9
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.6e-16 91.7 62 59.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-15 88.2 108 43.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.2e-14 84.0 325 30.5
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.1e-13 79.7 51 62.7
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.0e-12 77.4 191 35.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-11 75.1 47 66.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.5e-07 59.3 140 37.9
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.5e-06 58.5 119 35.3
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.5e-06 56.6 193 30.6


User provided reference genes

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