Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023543.2 Cucumis melo HOM05D008019 ORTHO05D010184 1.2e-88 329.7 151 100.0
CsaV3_7G031160 Cucumis sativus L. HOM05D008019 ORTHO05D010184 2.7e-85 318.5 151 96.0
ClCG09G004230 Citrullus lanatus HOM05D008019 ORTHO05D010184 4.3e-75 284.6 151 86.8
Sed0006336 Sechium edule HOM05D008019 ORTHO05D010184 4.9e-55 218.0 149 71.1
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 4.2e-54 214.9 147 67.3
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 4.2e-54 214.9 147 66.0
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 7.1e-54 214.2 149 65.8
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 1.2e-53 213.4 151 64.2
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 1.2e-53 213.4 147 67.3
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 1.6e-53 213.0 147 66.7
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 1.6e-53 213.0 152 66.4
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 2.1e-53 212.6 134 68.7
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 2.1e-53 212.6 147 65.3
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 3.5e-53 211.8 144 68.1
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 2.3e-52 209.1 147 66.0
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 3.0e-52 208.8 153 62.7
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 5.1e-52 208.0 147 61.9
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 8.7e-52 207.2 147 65.3
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 1.1e-51 206.8 112 77.7
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 1.1e-51 206.8 112 77.7
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 1.5e-51 206.5 154 63.6
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 1.9e-51 206.1 113 76.1
GSVIVG01032075001 Vitis vinifera HOM05D008019 ORTHO05D010184 3.3e-51 205.3 104 80.8
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 4.3e-51 204.9 148 62.8
SGA_v2.0_scaffold167G38441 Striga asiatica HOM05D008019 ORTHO05D010184 4.3e-51 204.9 123 74.8
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 5.6e-51 204.5 148 63.5
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 5.6e-51 204.5 148 62.8
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 5.6e-51 204.5 149 63.1
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 7.4e-51 204.1 147 62.6
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 9.6e-51 203.8 104 79.8
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 1.3e-50 203.4 104 81.7
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 1.3e-50 203.4 151 62.9
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 2.1e-50 202.6 151 61.6
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 6.2e-50 201.1 148 61.5
Lj9A631G50 Lonicera japonica HOM05D008019 ORTHO05D010184 6.2e-50 201.1 104 78.8
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 1.1e-49 200.3 151 61.6
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 1.1e-49 200.3 150 62.7
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 1.8e-49 199.5 115 72.2
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 3.1e-49 198.7 151 60.3
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 4.0e-49 198.4 104 76.9
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 6.9e-49 197.6 116 70.7
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 9.0e-49 197.2 128 65.6
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 1.5e-48 196.4 104 77.9
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 1.5e-48 196.4 104 77.9
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 1.5e-48 196.4 144 62.5
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 2.6e-48 195.7 129 65.1
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 4.5e-48 194.9 161 58.4
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 4.5e-48 194.9 104 76.0
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 7.6e-48 194.1 106 73.6
Duzib138G0215 Durio zibethinus HOM05D008019 ORTHO05D010184 7.6e-48 194.1 151 61.6
CDE05G1162 Ceratophyllum demersum HOM05D008019 ORTHO05D010184 1.0e-47 193.7 104 76.9
SalBow5G2002 Salvia bowleyana HOM05D008019 ORTHO05D010184 1.3e-47 193.4 115 70.4
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 2.2e-47 192.6 151 59.6
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 2.9e-47 192.2 146 60.3
Os09g0485800 Oryza sativa ssp. japonica HOM05D008019 ORTHO05D010184 3.8e-47 191.8 104 77.9
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 4.9e-47 191.4 153 55.6
unitig_750.g28450 Utricularia gibba HOM05D008019 ORTHO05D010184 4.9e-47 191.4 113 69.9
Sabra09G0046100 Salix brachista HOM05D000752 ORTHO05D000572 8.4e-47 190.7 98 80.6
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 1.1e-46 190.3 124 70.2
SEGI_23902 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 2.5e-46 189.1 146 59.6
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 7.4e-43 177.6 198 47.5
Migut.B01317 Erythranthe guttata HOM05D008019 ORTHO05D010184 2.9e-39 165.6 88 79.5
Pp3c14_7420 Physcomitrium patens HOM05D008019 ORTHO05D010184 6.5e-39 164.5 104 65.4
FAN03G3138 Fragaria x ananassa HOM05D008019 ORTHO05D010184 7.2e-38 161.0 101 67.3
ATR0605G214 Amborella trichopoda HOM05D008019 ORTHO05D010184 9.3e-38 160.6 97 72.2
Hund19732 Selenicereus undatus HOM05D008019 ORTHO05D010184 6.7e-36 154.5 76 82.9
Lalb_Chr19g0132131 Lupinus albus HOM05D008019 ORTHO05D010184 5.7e-35 151.4 77 79.2
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 4.5e-32 141.7 130 55.4
Zm00001eb101810 Zea mays HOM05D008019 ORTHO05D010184 6.1e-29 131.3 73 74.0
Zm00001eb101800 Zea mays HOM05D008019 ORTHO05D010184 3.0e-28 129.0 73 71.2
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 4.2e-22 108.6 106 54.7
SEGI_33125 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 7.0e-17 91.3 51 70.6
SEGI_37443 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 1.9e-06 56.6 32 65.6


User provided reference genes

Program Settings