Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 2.6e-55 218.4 105 100.0
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.1e-50 203.0 105 91.4
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 6.9e-48 193.7 105 86.7
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.4e-37 159.5 105 69.5
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 7.2e-29 130.6 103 53.4
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 8.0e-28 127.1 97 54.6
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 4.0e-27 124.8 103 48.5
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 4.0e-27 124.8 103 49.5
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 5.2e-27 124.4 103 49.5
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 6.7e-27 124.0 95 52.6
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.1e-26 123.2 92 54.3
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 1.1e-26 123.2 103 50.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.0e-26 122.5 100 55.0
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 2.0e-26 122.5 103 50.5
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 2.0e-26 122.5 97 48.5
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 2.6e-26 122.1 97 53.6
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 3.3e-26 121.7 98 55.1
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.7e-26 120.9 97 50.5
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.7e-26 120.9 97 50.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.7e-26 120.9 97 50.5
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.7e-26 120.9 97 50.5
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 7.5e-26 120.6 103 48.5
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 9.7e-26 120.2 97 50.5
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 1.3e-25 119.8 99 47.5
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.7e-25 119.4 103 46.6
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.7e-25 119.4 103 48.5
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 3.7e-25 118.2 97 49.5
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 3.7e-25 118.2 95 49.5
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 3.7e-25 118.2 97 49.5
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 3.7e-25 118.2 97 51.5
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 4.8e-25 117.9 105 51.4
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 6.3e-25 117.5 85 56.5
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 8.2e-25 117.1 103 47.6
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 8.2e-25 117.1 97 49.5
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 8.2e-25 117.1 95 52.6
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.1e-24 116.7 97 48.5
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 1.8e-24 115.9 103 49.5
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 4.1e-24 114.8 95 49.5
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 5.3e-24 114.4 99 49.5
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 5.3e-24 114.4 98 48.0
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 9.1e-24 113.6 103 44.7
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 9.1e-24 113.6 98 52.0
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 9.1e-24 113.6 98 46.9
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 9.1e-24 113.6 96 46.9
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 1.2e-23 113.2 98 50.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.2e-23 113.2 90 52.2
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.6e-23 112.8 91 50.5
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 1.6e-23 112.8 105 47.6
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.6e-23 112.8 99 47.5
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 2.7e-23 112.1 91 51.6
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 2.7e-23 112.1 93 50.5
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 4.5e-23 111.3 103 45.6
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 5.9e-23 110.9 92 52.2
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 2.9e-22 108.6 74 58.1
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 2.9e-22 108.6 91 47.3
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 3.8e-22 108.2 105 47.6
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 3.8e-22 108.2 74 54.1
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.8e-22 108.2 94 51.1
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 3.8e-22 108.2 95 47.4
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 5.0e-22 107.8 95 47.4
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 5.0e-22 107.8 96 49.0
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 6.5e-22 107.5 93 49.5
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 6.5e-22 107.5 95 44.2
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 8.5e-22 107.1 94 47.9
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.5e-21 106.3 97 42.3
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 2.5e-21 105.5 89 46.1
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 3.2e-21 105.1 94 46.8
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 4.2e-21 104.8 93 48.4
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 9.4e-21 103.6 82 48.8
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 9.4e-21 103.6 93 49.5
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.2e-20 103.2 79 49.4
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 2.1e-20 102.4 106 42.5
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.7e-20 102.1 74 51.4
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 2.7e-20 102.1 92 46.7
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 2.7e-20 102.1 92 46.7
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 3.6e-20 101.7 76 53.9
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 3.6e-20 101.7 94 44.7
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 4.7e-20 101.3 93 46.2
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 4.7e-20 101.3 94 46.8
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 4.7e-20 101.3 98 43.9
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 4.7e-20 101.3 98 43.9
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 6.1e-20 100.9 74 51.4
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-20 100.5 92 45.7
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 51.4
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 51.4
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 8.0e-20 100.5 92 45.7
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 51.4
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 51.4
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 1.0e-19 100.1 79 50.6
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.0e-19 100.1 74 50.0
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.4e-19 99.8 74 51.4
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 54.1
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 51.4
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 51.4
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 51.4
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 51.4
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 51.4
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 1.8e-19 99.4 96 44.8
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 4.0e-19 98.2 74 52.7
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 4.0e-19 98.2 74 50.0
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 4.0e-19 98.2 74 50.0
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 5.2e-19 97.8 92 44.6
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 6.8e-19 97.4 75 52.0
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-18 96.7 74 51.4
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-18 96.7 74 51.4
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-18 96.7 74 51.4
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 9.8e-18 93.6 59 64.4
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 9.8e-18 93.6 90 47.8
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 1.3e-17 93.2 82 45.1
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.4e-16 89.0 92 38.0
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 2.4e-16 89.0 92 38.0
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.4e-16 89.0 77 48.1
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 3.1e-16 88.6 92 38.0
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 4.1e-16 88.2 92 38.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 4.1e-16 88.2 92 38.0
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 7.0e-16 87.4 92 40.2
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.8e-14 81.6 94 43.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.8e-14 81.6 94 43.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 2.5e-13 79.0 78 43.6
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 5.4e-08 61.2 59 49.2
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 7.0e-08 60.8 63 39.7
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 9.2e-08 60.5 88 38.6
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 2.7e-07 58.9 58 43.1
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 3.5e-07 58.5 98 33.7
Sopen03g040720 Solanum pennellii HOM05D001848 ORTHO05D001295 3.5e-07 58.5 58 43.1
PGSC0003DMG400002487 Solanum tuberosum HOM05D001848 ORTHO05D001295 3.5e-07 58.5 58 43.1
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 3.5e-07 58.5 87 33.3
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 4.5e-07 58.2 99 35.4
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 5.9e-07 57.8 86 33.7
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 7.7e-07 57.4 73 37.0
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 1.0e-06 57.0 92 33.7
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-06 56.6 59 42.4
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 1.3e-06 56.6 62 40.3
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.3e-06 55.8 93 32.3
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 2.3e-06 55.8 87 35.6
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 2.3e-06 55.8 87 34.5
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 2.3e-06 55.8 86 34.9
Ah.11g051070 Amaranthus hybridus HOM05D001848 ORTHO05D001295 2.9e-06 55.5 60 38.3
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 2.9e-06 55.5 87 34.5
CiPaw.01G107800 Carya illinoinensis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 90 35.6
ClCG07G016680 Citrullus lanatus HOM05D001848 ORTHO05D001295 2.9e-06 55.5 90 33.3
HanXRQChr05g0141121 Helianthus annuus HOM05D001848 ORTHO05D001295 2.9e-06 55.5 65 38.5
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 3.8e-06 55.1 97 32.0
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 5.0e-06 54.7 58 41.4
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 5.0e-06 54.7 55 45.5
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 5.0e-06 54.7 96 31.2
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 6.6e-06 54.3 94 30.9
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 6.6e-06 54.3 90 34.4
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 8.6e-06 53.9 93 32.3
Lj1g0024594 Lotus japonicus HOM05D001848 ORTHO05D001295 8.6e-06 53.9 98 31.6


User provided reference genes

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