Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 3.0e-210 734.9 373 100.0
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 3.8e-205 718.0 373 97.6
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 4.3e-201 704.5 373 96.2
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 9.0e-167 590.5 374 84.0
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 7.7e-158 560.8 367 79.0
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.3e-157 560.1 374 79.4
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.1e-156 557.0 373 78.0
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 1.4e-156 556.6 373 78.0
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.2e-155 553.5 371 79.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.6e-155 552.0 369 79.1
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.0e-154 550.4 376 76.9
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 1.5e-153 546.6 369 78.6
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.0e-153 546.2 369 78.6
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 2.6e-153 545.8 377 76.9
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 9.7e-153 543.9 377 77.5
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 2.2e-152 542.7 376 76.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 6.3e-152 541.2 381 75.6
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 8.2e-152 540.8 385 75.1
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 8.2e-152 540.8 377 77.5
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.8e-151 539.7 357 78.7
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 2.4e-151 539.3 349 79.9
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 3.1e-151 538.9 372 77.4
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 3.1e-151 538.9 349 79.9
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 5.3e-151 538.1 374 76.7
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 6.9e-151 537.7 377 76.9
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 7.7e-150 534.3 358 77.9
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.0e-149 533.9 376 74.5
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.9e-149 532.3 335 81.8
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 3.8e-149 531.9 350 79.4
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 3.8e-149 531.9 386 75.9
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 3.8e-149 531.9 340 79.7
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 5.0e-149 531.6 353 78.8
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 6.5e-149 531.2 347 80.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 6.5e-149 531.2 351 79.8
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 6.5e-149 531.2 351 79.8
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-148 530.4 350 79.1
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.1e-148 530.4 350 79.1
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.1e-148 530.4 375 73.9
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 1.1e-148 530.4 370 75.4
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.4e-148 530.0 347 79.8
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.4e-148 530.0 373 76.1
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 2.5e-148 529.3 349 78.8
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.2e-147 526.9 333 80.5
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 1.6e-147 526.6 349 79.1
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 2.7e-147 525.8 362 75.1
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.0e-146 523.9 337 79.8
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.0e-146 523.9 337 79.8
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.4e-146 523.5 373 75.6
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.8e-146 523.1 355 78.3
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 2.6e-145 519.2 349 77.9
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 2.6e-145 519.2 346 76.9
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 5.7e-145 518.1 350 76.9
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 9.7e-145 517.3 363 76.0
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.3e-144 516.9 351 76.6
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.7e-144 516.5 338 78.7
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 6.3e-144 514.6 338 77.8
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.4e-143 513.5 350 76.3
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 4.1e-143 511.9 376 72.6
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.1e-143 511.9 342 78.1
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 7.0e-143 511.1 362 74.0
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.2e-142 510.4 365 74.2
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.6e-142 510.0 346 75.7
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.6e-142 510.0 360 75.0
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.0e-142 509.6 327 79.8
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.5e-142 508.8 364 76.4
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 5.9e-142 508.1 363 74.1
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.0e-141 507.3 336 77.1
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 1.7e-141 506.5 330 80.3
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.7e-141 506.5 369 71.0
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 2.9e-141 505.8 372 72.3
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.8e-141 505.4 367 73.3
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 6.5e-141 504.6 330 79.7
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 1.5e-140 503.4 363 71.9
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.9e-140 503.1 403 71.5
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 6.1e-139 498.0 380 70.3
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 1.4e-138 496.9 376 70.5
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 4.0e-138 495.4 379 71.5
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 8.8e-138 494.2 341 74.8
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.5e-137 493.4 382 69.9
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 2.0e-137 493.0 379 71.0
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 7.5e-137 491.1 351 74.4
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.8e-136 489.2 327 79.8
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 3.7e-136 488.8 330 77.0
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 3.1e-135 485.7 400 66.8
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.7e-134 482.6 389 68.1
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 4.5e-134 481.9 330 78.2
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 5.9e-134 481.5 355 71.5
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 5.9e-134 481.5 372 69.6
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 1.0e-133 480.7 325 78.2
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.7e-133 479.9 277 88.4
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.8e-133 478.8 330 77.9
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-132 477.2 361 72.0
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 3.2e-132 475.7 313 79.6
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.2e-131 473.8 362 69.1
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 1.4e-130 470.3 357 69.2
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 1.4e-130 470.3 343 71.7
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 3.4e-129 465.7 359 70.8
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.7e-128 462.2 352 69.0
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.0e-125 454.1 364 67.9
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 3.8e-125 452.2 332 72.9
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 6.8e-122 441.4 341 71.3
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 2.4e-119 433.0 335 69.3
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 1.8e-114 416.8 290 74.5
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 2.2e-112 409.8 349 63.9
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 7.8e-110 401.4 277 72.2
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 7.8e-110 401.4 326 65.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 3.9e-109 399.1 233 85.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.1e-103 380.9 287 67.6
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.2e-94 350.9 309 60.5
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.1e-92 344.4 293 64.8
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 2.5e-92 343.2 206 82.0
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 6.0e-86 322.0 308 57.8
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.6e-83 313.9 254 61.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 3.4e-81 306.2 231 70.6
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.6e-81 305.1 235 70.6
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.7e-80 303.9 280 60.0
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 2.3e-77 293.5 253 58.5
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 4.9e-72 275.8 209 72.2
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 8.1e-67 258.5 248 58.1
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 2.7e-62 243.4 156 82.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 8.4e-56 221.9 177 68.9
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 6.0e-54 215.7 172 70.3
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 1.8e-53 214.2 203 58.6
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 8.7e-53 211.8 172 68.0
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.8e-51 206.8 125 83.2
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.1e-50 204.9 172 66.9
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.2e-49 201.4 109 90.8
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 7.9e-46 188.7 137 73.0
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 7.4e-36 155.6 114 67.5
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 6.5e-32 142.5 259 36.7
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 6.5e-32 142.5 243 37.0
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.2e-24 117.5 158 46.2
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.5e-23 114.0 188 44.1
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 5.5e-23 112.8 164 40.2
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 1.0e-21 108.6 241 31.1
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 2.3e-21 107.5 76 73.7
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.7e-20 102.8 66 74.2
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 2.4e-18 97.4 50 90.0
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 2.9e-16 90.5 115 54.8
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 1.2e-14 85.1 86 53.5


User provided reference genes

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