Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.9e-145 519.2 270 100.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 4.3e-118 428.3 458 57.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.5e-110 402.5 500 51.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 3.0e-103 379.0 458 51.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.3e-77 293.9 456 42.3
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 8.2e-77 291.2 459 42.5
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 6.9e-76 288.1 470 38.9
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.2e-75 287.3 458 41.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.0e-74 284.3 458 41.7
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.9e-74 282.7 435 41.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.9e-74 282.7 458 41.3
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.8e-74 282.3 453 41.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.5e-73 278.5 458 39.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.7e-72 276.2 445 41.8
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.6e-72 275.8 458 39.7
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.8e-71 273.5 453 40.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.3e-71 273.1 450 40.7
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.1e-71 271.9 453 40.0
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.5e-70 270.4 452 39.4
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-70 270.0 451 40.1
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.0e-70 270.0 452 39.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.3e-70 269.2 452 40.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.3e-70 269.2 456 40.4
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.4e-70 268.9 458 39.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.4e-70 268.9 458 39.1
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 4.4e-70 268.9 456 39.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.7e-70 268.5 450 39.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 5.7e-70 268.5 449 40.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 9.7e-70 267.7 448 39.7
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-69 266.9 452 39.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.8e-69 266.2 458 38.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.8e-69 266.2 449 40.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-69 265.8 456 39.0
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.7e-69 265.8 456 39.0
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.8e-69 265.4 456 38.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 4.8e-69 265.4 456 38.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.3e-69 265.0 453 40.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 8.2e-69 264.6 450 39.3
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.1e-68 264.2 450 39.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-68 263.8 456 38.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-68 263.8 456 38.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 3.1e-68 262.7 449 38.8
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 3.1e-68 262.7 449 38.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 7.0e-68 261.5 456 38.4
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 7.0e-68 261.5 457 38.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.1e-68 261.2 456 38.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.1e-68 261.2 457 38.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.5e-67 260.4 452 39.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.6e-67 259.6 457 39.2
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.5e-67 259.2 447 39.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.5e-67 259.2 456 37.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.5e-67 259.2 446 38.6
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.5e-67 259.2 456 38.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 5.9e-67 258.5 452 37.8
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.3e-66 257.3 449 39.4
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.5e-66 255.0 454 38.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 6.5e-66 255.0 455 38.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.5e-65 253.8 456 38.6
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.5e-65 253.8 447 37.1
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.5e-65 253.1 456 37.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.2e-65 252.7 452 38.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.2e-65 252.7 456 38.4
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.2e-65 251.5 453 38.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.2e-65 251.5 448 38.2
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 7.2e-65 251.5 472 37.1
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 9.4e-65 251.1 475 37.3
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 9.4e-65 251.1 475 37.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.4e-65 251.1 461 37.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-64 250.8 456 38.4
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-64 250.8 452 36.9
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-64 250.8 452 36.9
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.2e-64 250.8 451 38.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.6e-64 250.4 426 39.7
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.6e-64 250.4 451 37.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.1e-64 250.0 452 38.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.7e-64 249.6 439 38.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.6e-64 249.2 469 36.9
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.6e-64 249.2 396 41.2
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 6.1e-64 248.4 478 36.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 8.0e-64 248.1 440 38.4
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 8.0e-64 248.1 446 38.3
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.3e-63 246.5 440 38.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.0e-63 246.1 451 37.9
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 5.2e-63 245.4 452 37.8
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.5e-62 243.8 446 36.3
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.0e-62 243.4 456 37.9
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.6e-62 243.0 194 64.9
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 5.7e-62 241.9 451 37.0
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.7e-61 239.2 447 37.4
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.8e-61 238.8 194 66.0
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 6.3e-61 238.4 399 39.6
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.2e-61 238.0 363 40.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.1e-60 236.1 455 36.7
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.1e-60 236.1 192 67.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 4.1e-60 235.7 457 36.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.1e-60 235.7 452 36.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 5.3e-60 235.3 480 35.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 2.0e-59 233.4 389 39.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.6e-59 233.0 446 36.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.6e-59 233.0 463 35.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.3e-58 230.7 456 35.5
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.7e-58 230.3 475 36.2
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.9e-58 229.6 192 63.5
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.5e-57 227.3 456 35.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.2e-57 225.7 440 37.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.5e-57 225.3 381 38.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-56 224.2 454 36.1
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.6e-56 223.8 173 67.6
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.7e-56 223.0 447 35.3
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.0e-55 221.1 192 61.5
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 3.0e-55 219.5 444 35.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.8e-55 218.0 451 35.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-54 217.6 453 33.8
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.4e-54 215.7 360 38.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.8e-53 213.0 421 36.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.7e-51 206.5 451 33.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.5e-51 206.1 487 31.6
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.5e-51 205.7 443 32.3
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-50 204.1 455 32.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 5.0e-50 202.2 393 35.1
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.0e-47 192.6 385 35.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.4e-46 189.1 353 35.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.1e-44 183.0 454 30.0
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.6e-43 180.6 445 31.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.6e-43 180.6 193 51.8
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.9e-43 178.7 191 50.8
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.8e-42 176.0 181 51.9
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.0e-42 175.6 439 30.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.3e-41 172.9 191 49.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.6e-40 170.6 331 36.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 6.1e-40 168.7 191 49.2
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 4.0e-39 166.0 450 28.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.9e-37 159.1 445 28.5
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.0e-32 141.7 135 62.2
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.0e-31 141.4 158 48.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.0e-31 139.4 394 26.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.2e-29 133.7 389 29.3
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.0e-27 125.6 118 60.2
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.6e-24 117.5 95 61.1
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 8.1e-24 115.2 78 67.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-22 111.3 76 71.1
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.4e-22 109.8 73 71.2
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.4e-22 109.4 73 74.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 4.4e-22 109.4 74 68.9
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.9e-21 105.9 64 75.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.9e-20 104.0 72 70.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.1e-20 102.8 63 74.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.6e-19 100.9 99 52.5
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 2.9e-13 80.1 100 47.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 7.1e-12 75.5 43 79.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.1e-08 63.9 43 72.1


User provided reference genes

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