Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.8e-126 455.3 234 100.0
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.1e-104 383.6 214 94.9
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.9e-102 375.6 210 91.4
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.1e-84 316.2 212 80.7
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 8.1e-73 277.7 217 71.9
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.2e-71 273.9 196 76.0
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.5e-71 273.5 204 71.1
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.0e-71 273.1 205 70.7
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.4e-71 272.3 196 75.5
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.5e-71 271.9 206 74.8
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 3.8e-70 268.9 205 68.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-70 268.9 205 68.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.2e-69 265.8 206 67.5
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 4.2e-69 265.4 199 74.4
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 4.2e-69 265.4 199 73.9
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 9.3e-69 264.2 204 69.1
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.2e-68 263.8 197 74.6
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.0e-67 260.8 204 71.6
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 2.3e-67 259.6 205 69.3
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.3e-67 259.6 220 68.2
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 5.1e-67 258.5 207 71.0
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.7e-67 258.1 178 78.7
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 6.7e-67 258.1 200 71.0
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 6.7e-67 258.1 196 71.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.1e-66 257.3 201 68.2
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.9e-66 256.5 212 66.5
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.3e-66 255.8 192 68.8
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 9.6e-66 254.2 214 67.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.6e-66 254.2 203 70.0
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.1e-65 253.1 187 71.1
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.1e-65 253.1 211 68.2
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 6.2e-65 251.5 205 65.9
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 6.2e-65 251.5 208 69.7
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 5.3e-64 248.4 204 69.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.3e-64 248.4 192 68.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.0e-64 247.7 203 68.5
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.6e-63 246.1 203 65.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.6e-63 246.1 181 75.1
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.4e-63 245.7 205 63.4
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.4e-63 245.7 201 66.2
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 7.6e-63 244.6 214 63.6
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.0e-62 244.2 208 65.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.7e-62 243.4 201 65.2
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.7e-62 243.4 201 68.2
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.9e-62 242.7 209 66.5
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-62 242.3 178 72.5
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 6.5e-62 241.5 210 63.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.9e-61 240.0 206 61.7
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 3.2e-61 239.2 212 62.7
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 4.2e-61 238.8 200 66.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 5.5e-61 238.4 222 60.4
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 9.3e-61 237.7 222 63.1
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.2e-60 237.3 210 61.4
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.6e-60 236.9 180 68.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 7.9e-60 234.6 197 68.0
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.3e-59 233.8 199 63.8
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.8e-59 233.4 214 61.2
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.3e-59 233.0 180 72.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.3e-59 233.0 234 59.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 3.9e-59 232.3 208 63.0
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 5.1e-59 231.9 212 62.7
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 5.1e-59 231.9 158 75.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 6.7e-59 231.5 178 69.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 8.7e-59 231.1 216 60.6
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 8.7e-59 231.1 138 85.5
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.1e-58 230.7 199 61.3
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.5e-58 230.3 156 77.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.5e-58 230.3 202 63.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.9e-58 229.9 196 62.8
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-58 229.9 225 59.6
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.5e-58 229.6 214 59.8
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.5e-58 229.6 145 77.9
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.3e-57 227.3 202 60.9
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.1e-57 226.5 213 59.2
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.8e-57 226.1 202 60.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 2.8e-57 226.1 196 64.3
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 3.7e-57 225.7 198 64.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.7e-57 225.7 202 59.4
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 6.3e-57 224.9 203 59.6
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 6.3e-57 224.9 203 59.6
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 6.3e-57 224.9 202 59.9
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 6.3e-57 224.9 200 64.0
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.4e-56 223.8 210 58.6
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.4e-56 223.8 196 63.3
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.8e-56 223.4 202 61.4
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.8e-56 223.4 199 62.3
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.4e-56 223.0 202 59.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.4e-56 223.0 188 67.0
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 3.1e-56 222.6 195 60.0
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.1e-56 222.6 200 59.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 3.1e-56 222.6 210 58.6
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.1e-56 222.6 200 59.0
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 3.1e-56 222.6 211 60.2
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 4.1e-56 222.2 199 60.3
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 4.1e-56 222.2 200 63.0
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 5.3e-56 221.9 208 59.1
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 5.3e-56 221.9 200 63.0
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.0e-56 221.1 177 71.2
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.5e-55 220.3 195 60.5
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.5e-55 220.3 195 60.5
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.0e-55 219.9 202 58.4
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 3.4e-55 219.2 217 56.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.4e-55 219.2 202 59.4
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 4.5e-55 218.8 168 69.0
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.9e-54 216.1 205 61.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 3.2e-53 212.6 195 61.0
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 9.3e-53 211.1 169 66.3
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 9.3e-53 211.1 136 78.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.1e-52 209.9 157 71.3
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.1e-52 209.9 139 76.3
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.8e-51 206.8 193 60.1
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.0e-51 206.1 234 54.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 3.9e-51 205.7 203 60.6
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 5.1e-51 205.3 202 59.4
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.5e-50 203.0 161 70.2
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.3e-49 200.7 213 57.7
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 8.2e-49 198.0 209 56.9
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.1e-48 196.1 209 56.5
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.3e-48 195.3 181 59.1
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 3.9e-43 179.1 127 69.3
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 9.7e-42 174.5 132 65.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.2e-41 173.3 128 68.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 8.2e-41 171.4 133 66.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 4.1e-40 169.1 152 60.5
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.3e-40 168.7 152 61.2
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 6.9e-40 168.3 201 53.2
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.7e-33 147.1 151 58.3
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.8e-33 146.4 105 66.7
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 6.3e-33 145.2 197 49.7
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-29 134.0 137 52.6
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.6e-28 130.6 214 41.6
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.7e-28 129.8 132 59.8
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-22 110.5 75 68.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-22 110.5 75 68.0
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 2.5e-21 106.7 77 72.7
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 4.1e-16 89.4 65 70.8
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.0e-16 88.6 70 65.7
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 7.5e-10 68.6 140 37.9
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.3e-09 67.8 45 71.1


User provided reference genes

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