Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1551.2 775 100.0
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 763 82.4
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1228.8 769 79.8
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1200.3 786 76.8
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 752 80.3
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1191.4 786 76.7
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 771 78.2
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1129.0 769 72.4
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1117.4 767 72.0
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 766 72.2
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1112.4 750 72.7
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1110.1 750 72.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1107.8 767 72.0
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 766 71.1
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1102.8 753 72.2
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1098.6 770 70.3
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1097.8 766 71.0
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1092.8 766 71.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1092.8 765 71.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1091.6 770 70.6
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1091.3 765 71.1
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1090.1 765 70.8
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 766 70.4
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 0.0e+00 1086.6 571 94.4
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 766 70.1
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1077.0 784 68.5
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1075.8 774 69.4
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 5.3e-312 1074.3 776 69.7
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 4.8e-311 1070.8 753 69.6
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 1.4e-310 1069.3 766 69.5
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 4.0e-310 1067.8 768 69.3
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.0e-309 1065.4 766 69.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 3.4e-309 1064.7 766 70.0
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.9e-308 1061.6 767 69.0
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.8e-308 1061.2 766 68.8
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 1.4e-307 1059.3 806 65.6
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 4.1e-307 1057.7 766 68.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 5.4e-307 1057.4 766 69.5
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 1.6e-306 1055.8 766 68.7
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 2.1e-306 1055.4 768 69.4
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 3.3e-304 1048.1 768 68.2
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.6e-304 1047.3 751 69.8
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 6.2e-303 1043.9 766 68.0
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 1.4e-302 1042.7 766 68.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.4e-302 1042.7 766 67.5
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 1.8e-302 1042.3 766 67.8
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 3.1e-302 1041.6 780 66.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 9.0e-302 1040.0 858 62.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 1.2e-301 1039.6 766 67.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.6e-301 1038.5 766 66.7
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 2.6e-301 1038.5 768 67.4
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 4.4e-301 1037.7 769 67.9
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 1.7e-300 1035.8 780 65.5
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 2.2e-300 1035.4 780 65.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 2.2e-300 1035.4 766 67.4
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 2.9e-300 1035.0 767 67.3
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 2.9e-300 1035.0 778 65.3
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 3.8e-300 1034.6 780 65.3
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 4.9e-300 1034.2 778 65.4
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 1.9e-299 1032.3 778 65.3
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 1.9e-299 1032.3 766 67.0
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 1.6e-298 1029.2 763 66.6
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 3.5e-298 1028.1 778 65.7
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 3.5e-298 1028.1 766 66.1
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 6.0e-298 1027.3 769 66.8
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 1.3e-295 1019.6 770 66.5
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 1.6e-295 1019.2 778 65.2
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 2.1e-295 1018.8 778 65.2
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 1.2e-293 1013.1 766 66.8
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 9.9e-293 1010.0 762 65.4
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 1.3e-292 1009.6 778 65.0
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 1.1e-291 1006.5 750 67.1
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 3.2e-291 1005.0 770 66.6
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-290 1003.0 766 66.6
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 7.9e-290 1000.3 778 63.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 6.7e-289 997.3 766 64.8
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 7.4e-288 993.8 756 64.8
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 1.8e-286 989.2 701 69.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 4.0e-286 988.0 756 65.2
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.2e-284 982.2 762 65.1
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 4.9e-284 981.1 766 63.2
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 1.1e-283 979.9 765 63.7
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.9e-283 979.2 751 65.2
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 3.5e-282 974.9 756 64.0
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 4.6e-282 974.5 752 65.0
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.8e-281 972.6 694 69.2
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 3.0e-281 971.8 777 63.7
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 2.5e-280 968.8 756 63.9
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 5.6e-280 967.6 768 63.2
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.8e-278 962.6 755 64.4
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 2.4e-278 962.2 761 63.2
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 6.9e-278 960.7 771 61.7
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.0e-276 956.8 710 66.9
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.2e-274 949.9 671 69.7
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.0e-273 946.8 655 71.1
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 9.7e-272 940.3 753 61.0
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.6e-271 939.5 745 64.2
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 2.4e-270 935.6 737 65.3
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 6.3e-263 911.0 772 61.8
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 7.9e-258 894.0 745 62.0
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 5.1e-257 891.3 766 59.9
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.7e-247 859.8 749 57.9
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.8e-247 859.0 661 65.2
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 4.8e-247 858.2 761 58.2
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 6.3e-247 857.8 633 67.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 6.7e-241 837.8 767 55.0
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.5e-227 793.5 533 71.9
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.2e-223 779.6 657 61.0
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 4.9e-223 778.5 654 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 2.2e-215 753.1 697 54.8
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.4e-192 676.0 504 67.5
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 8.4e-183 644.8 751 49.0
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 3.9e-180 636.0 443 70.0
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.1e-156 555.8 439 65.1
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.2e-141 508.1 373 68.1
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 7.7e-128 462.2 612 44.4
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.6e-115 420.6 269 76.2
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.8e-114 417.2 345 60.6
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.5e-110 404.1 346 56.1
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.9e-98 364.0 249 68.7
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 9.3e-73 279.3 248 57.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 8.1e-69 266.2 260 56.9
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-67 261.9 266 53.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-60 238.8 252 51.2
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.8e-55 221.9 217 55.3
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.3e-50 205.7 310 41.0
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.7e-50 205.3 179 59.2
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 6.7e-47 193.4 234 46.2
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-43 179.9 207 46.4
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.9e-41 175.3 150 58.7
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 1.6e-40 172.2 148 58.8
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.1e-40 171.8 117 73.5
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.1e-40 170.2 151 60.3
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.2e-37 161.8 133 64.7
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.8e-37 161.4 97 75.3
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.9e-36 156.8 120 64.2
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.3e-34 152.5 133 62.4
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.6e-32 144.4 95 68.4
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.3e-29 136.0 94 72.3
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.9e-27 127.1 99 65.7
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.2e-26 125.2 97 64.9
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 6.5e-26 123.6 95 63.2
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.5e-25 120.6 99 62.6
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 5.5e-25 120.6 97 64.9
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.1e-24 118.6 80 67.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.0e-23 116.3 80 68.8
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.4e-23 115.9 101 54.5
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.0e-18 99.8 86 60.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-15 89.7 78 56.4
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-15 89.7 78 56.4
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-15 89.4 78 56.4
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.8e-15 86.7 72 56.9
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.8e-15 86.7 72 59.7
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 2.0e-14 85.5 120 43.3
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.6e-14 85.1 74 56.8
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.5e-14 83.6 55 67.3
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 2.8e-13 81.6 67 56.7
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 5.0e-10 70.9 76 51.3
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.5e-10 70.5 55 63.6
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 3.2e-09 68.2 37 70.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.2e-09 67.0 55 60.0
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-08 65.1 45 66.7
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 1.8e-07 62.4 51 62.7
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 3.0e-07 61.6 155 33.5


User provided reference genes

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