Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1567.0 785 100.0
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1497.6 785 95.7
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1355.1 781 85.5
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1345.5 764 87.8
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1340.5 766 87.5
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1306.6 782 84.4
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1243.8 777 77.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1216.4 775 75.7
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1209.5 774 75.6
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1208.7 779 75.4
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1201.4 778 76.3
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 779 74.8
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 780 75.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 786 76.8
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 782 75.1
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1189.1 811 72.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1187.9 779 74.3
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1186.8 775 74.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 778 73.9
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 815 71.5
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 783 74.1
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 769 75.3
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 769 75.2
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1179.5 779 73.8
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1179.1 769 75.0
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 778 73.8
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 780 73.2
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1171.4 780 73.5
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 779 72.9
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1168.7 773 74.3
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 812 70.8
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1162.1 776 73.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 774 73.9
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 772 74.4
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1157.5 772 73.6
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 772 74.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1152.5 777 72.2
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 772 74.0
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1145.6 778 71.9
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1144.0 771 73.7
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1144.0 780 72.3
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1143.6 779 72.9
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 776 73.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1140.6 780 71.7
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1140.2 778 72.2
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 773 71.9
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1137.9 770 71.7
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1136.3 777 72.2
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 754 73.5
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1134.0 755 73.9
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1132.1 770 72.5
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 768 72.7
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1130.2 757 72.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1128.6 770 72.6
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1127.5 778 71.7
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1124.4 774 71.7
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1121.7 773 70.2
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 772 71.9
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 773 70.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 771 69.4
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1112.1 771 69.3
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1111.7 771 68.6
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 771 69.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 771 69.4
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 773 69.5
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1107.8 778 71.1
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 773 69.1
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 771 69.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1103.6 883 64.6
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1100.9 771 69.0
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1100.1 777 70.5
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1097.4 782 69.7
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1096.3 771 68.9
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 771 68.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1088.9 771 68.9
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1076.2 784 68.5
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 1.1e-311 1073.2 771 68.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 4.5e-309 1064.3 781 66.7
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 4.5e-309 1064.3 777 67.1
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.6e-306 1055.8 751 69.4
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 2.1e-306 1055.4 779 66.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 8.8e-305 1050.0 786 67.3
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 7.4e-304 1047.0 684 74.1
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 3.7e-303 1044.6 770 66.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 1.4e-302 1042.7 784 65.9
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.4e-302 1042.7 781 66.1
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 2.0e-301 1038.9 775 65.8
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.1e-296 1023.1 779 66.0
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 9.7e-296 1020.0 694 72.3
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-293 1013.1 779 66.4
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 8.5e-292 1006.9 757 67.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.9e-291 1005.7 793 63.9
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 3.6e-290 1001.5 763 68.2
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.8e-289 999.2 691 70.5
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 3.3e-288 995.0 773 64.4
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.1e-286 989.9 741 67.7
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 3.6e-282 974.9 770 66.1
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 2.6e-280 968.8 663 72.4
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.1e-275 953.4 747 63.6
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 3.4e-272 941.8 573 81.0
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.4e-270 936.4 782 63.4
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 8.6e-268 927.2 763 61.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 8.0e-266 920.6 770 59.1
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.3e-263 910.6 770 59.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 8.3e-255 884.0 633 70.3
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.2e-254 882.1 661 67.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.8e-242 842.4 669 64.7
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 2.1e-237 826.2 646 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 6.0e-237 824.7 702 59.3
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.5e-229 798.9 553 71.4
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 4.6e-229 798.5 516 75.6
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 6.2e-210 734.9 767 53.2
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 7.7e-184 648.3 445 70.8
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 4.2e-182 642.5 443 72.2
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 3.2e-145 520.0 346 71.4
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 6.6e-143 512.3 375 69.3
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.7e-130 469.9 607 44.8
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.4e-115 419.9 350 58.0
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-113 414.5 272 74.6
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 4.5e-99 366.7 250 68.8
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-91 341.7 250 66.8
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.5e-81 307.8 363 47.7
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 4.7e-72 276.9 185 70.3
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.1e-68 263.8 164 76.2
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.7e-66 258.5 259 55.2
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 4.2e-65 253.8 265 52.1
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.5e-65 253.4 146 81.5
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.8e-61 241.1 146 78.1
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.1e-60 239.2 229 52.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 7.7e-59 233.0 215 58.6
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 4.2e-57 227.3 251 50.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.0e-47 194.5 113 81.4
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.7e-46 190.3 109 83.5
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.3e-45 189.1 112 79.5
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.1e-44 186.0 109 81.7
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-44 183.3 207 49.3
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 3.5e-43 181.0 148 60.1
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.2e-41 174.1 149 59.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.8e-40 171.4 117 70.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.9e-39 166.4 107 69.2
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.5e-35 154.1 120 60.8
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 7.8e-35 153.3 86 86.0
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 3.8e-34 151.0 85 81.2
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.8e-34 151.0 100 69.0
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.6e-34 150.2 88 79.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-33 149.4 106 71.7
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-33 149.4 106 71.7
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.9e-33 148.7 106 71.7
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.1e-32 143.7 92 75.0
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-30 139.0 88 72.7
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 8.3e-29 133.3 90 67.8
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.4e-28 131.7 94 68.1
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.0e-27 127.1 223 38.1
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 5.6e-25 120.6 95 61.1
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.6e-24 119.0 223 36.8
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.2e-23 114.0 80 71.2
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 5.2e-23 114.0 72 75.0
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.1e-19 102.1 163 39.9
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.0e-19 100.5 74 59.5
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 6.8e-15 87.0 120 43.3
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.8e-14 84.0 60 68.3
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 5.4e-12 77.4 175 36.6
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.4e-12 77.4 45 77.8
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-11 76.3 62 59.7
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 5.1e-10 70.9 37 73.0
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 5.6e-09 67.4 44 65.9
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 2.8e-08 65.1 51 62.7
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 5.2e-07 60.8 43 69.8


User provided reference genes

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