Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.2e-239 832.8 421 100.0
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 2.1e-212 742.3 389 95.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 2.7e-212 741.9 392 95.2
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.6e-196 688.3 394 86.8
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 8.9e-163 577.4 394 74.9
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.6e-162 575.9 394 74.4
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.9e-161 572.4 380 76.6
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 4.9e-161 571.6 394 75.6
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 4.9e-161 571.6 388 74.5
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.9e-161 571.6 394 73.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 9.2e-160 567.4 393 72.0
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 3.5e-159 565.5 346 81.2
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 7.8e-159 564.3 318 85.8
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.3e-158 563.5 393 72.5
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.9e-158 562.0 384 74.7
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 3.9e-158 562.0 378 75.9
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 4.3e-157 558.5 342 80.7
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 7.3e-157 557.8 398 72.6
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 7.3e-157 557.8 392 73.5
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 7.3e-157 557.8 379 73.9
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.2e-156 557.0 390 73.8
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.2e-156 557.0 371 74.4
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.6e-156 556.6 363 76.9
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 4.7e-156 555.1 389 72.8
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 4.7e-156 555.1 404 71.3
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.2e-156 554.7 368 75.3
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 8.1e-156 554.3 366 75.7
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-155 553.5 341 78.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.8e-155 553.1 342 78.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 2.4e-155 552.7 353 77.6
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 6.9e-155 551.2 335 79.4
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 6.9e-155 551.2 336 79.5
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 9.0e-155 550.8 384 71.9
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.2e-154 550.4 341 78.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.2e-154 550.4 390 72.8
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.6e-154 547.7 341 78.3
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 9.9e-154 547.4 335 78.8
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 9.9e-154 547.4 389 72.5
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.9e-153 545.8 364 74.2
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.9e-153 545.8 327 81.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 6.4e-153 544.7 382 72.0
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 6.4e-153 544.7 325 80.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.1e-152 543.9 371 73.6
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 1.9e-152 543.1 322 80.1
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.9e-152 543.1 323 80.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.9e-152 543.1 337 77.7
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.4e-152 542.7 354 75.4
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 3.2e-152 542.3 407 67.6
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 3.2e-152 542.3 322 80.4
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-152 542.0 336 78.3
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 7.1e-152 541.2 365 74.2
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 7.1e-152 541.2 377 71.9
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 4.6e-151 538.5 319 80.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 6.0e-151 538.1 397 67.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.3e-150 537.0 354 74.6
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.3e-150 536.2 334 78.1
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 2.3e-150 536.2 334 77.8
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.0e-150 535.8 316 80.7
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 3.0e-150 535.8 316 80.7
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.0e-150 535.8 316 80.7
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 3.9e-150 535.4 319 79.6
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 6.6e-150 534.6 319 80.3
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 8.7e-150 534.3 322 78.6
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.5e-149 533.5 407 68.3
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.5e-149 533.5 387 71.3
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.5e-149 532.7 383 70.8
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.6e-149 531.6 411 66.9
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 5.6e-149 531.6 408 67.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 7.3e-149 531.2 314 82.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.3e-148 530.4 326 78.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 4.8e-148 528.5 397 64.7
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 6.2e-148 528.1 322 78.0
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.4e-147 526.9 351 72.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 3.1e-147 525.8 306 82.0
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.3e-147 525.0 318 76.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 9.9e-146 520.8 330 77.0
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 9.9e-146 520.8 411 67.9
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.3e-145 520.4 393 68.2
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.6e-143 513.5 367 69.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.9e-141 506.5 390 66.7
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 4.3e-141 505.4 376 69.4
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.4e-136 489.6 276 84.4
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.4e-136 489.6 386 65.0
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 3.3e-133 479.2 395 64.8
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.8e-132 475.3 349 71.3
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.0e-130 469.9 276 81.9
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 8.4e-129 464.5 268 83.2
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.2e-127 460.7 340 70.0
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 8.7e-126 454.5 267 81.6
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.4e-123 447.2 322 71.1
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.1e-120 437.6 261 82.0
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.8e-118 430.3 408 55.6
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 3.9e-118 429.1 320 62.5
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 2.8e-116 422.9 342 59.4
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.0e-113 414.5 268 73.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.5e-109 400.6 364 55.2
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.3e-108 397.5 301 69.8
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-107 393.7 267 73.8
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.2e-105 386.7 272 71.7
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 6.1e-103 378.6 290 67.6
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.0e-101 373.6 271 71.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.4e-91 340.1 226 72.6
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.4e-83 313.5 269 66.2
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 8.3e-76 288.5 336 45.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 2.4e-75 287.0 236 64.4
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.0e-73 281.6 318 52.2
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.7e-73 280.8 319 43.3
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.7e-73 280.8 319 43.3
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 3.6e-71 273.1 311 46.3
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.0e-69 267.3 235 60.4
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.4e-67 261.2 155 81.9
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.5e-61 241.1 130 89.2
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.6e-61 240.4 166 73.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.0e-37 161.0 91 84.6
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 3.4e-37 160.2 406 30.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-34 151.0 104 69.2
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-30 138.7 79 82.3
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.8e-29 132.9 85 69.4
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.9e-29 132.1 89 71.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 4.8e-23 113.2 105 59.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 6.2e-23 112.8 124 46.0
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 6.7e-17 92.8 74 67.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 8.7e-17 92.4 65 66.2
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 2.5e-16 90.9 59 76.3
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 8.2e-15 85.9 132 39.4
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 8.2e-15 85.9 132 39.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-14 85.1 54 72.2
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 7.6e-13 79.3 47 78.7
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 3.8e-12 77.0 110 48.2
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.1e-11 75.5 117 47.0
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.9e-11 74.7 95 46.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 2.5e-11 74.3 288 27.4
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.5e-11 74.3 92 48.9
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 2.1e-10 71.2 40 80.0
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.7e-10 70.9 299 26.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.7e-10 70.9 298 26.5
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 3.5e-10 70.5 376 25.8
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 4.6e-10 70.1 298 26.5
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 6.0e-10 69.7 346 25.1
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 7.9e-10 69.3 289 27.0
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.0e-09 68.9 341 26.1
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.8e-09 68.2 298 26.2
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.8e-09 68.2 350 26.3
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.3e-09 67.8 283 26.1
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.3e-09 67.8 289 26.3
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 2.3e-09 67.8 300 26.7
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 3.9e-09 67.0 281 26.7
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 5.1e-09 66.6 349 25.5
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 5.1e-09 66.6 75 49.3
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 6.7e-09 66.2 88 43.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 6.7e-09 66.2 303 25.7
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 8.7e-09 65.9 270 27.8
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.5e-08 64.3 295 26.4
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 3.3e-08 63.9 354 24.3
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 5.7e-08 63.2 283 26.1
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-07 62.0 42 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.6e-07 61.6 258 27.9
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 2.2e-07 61.2 290 25.2
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 2.8e-07 60.8 36 75.0
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 3.7e-07 60.5 282 26.6
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 4.8e-07 60.1 283 27.2


User provided reference genes

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