Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 1.8e-36 156.0 81 100.0
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 7.6e-27 124.0 81 80.2
Thecc.06G073200 Theobroma cacao HOM05D008630 ORTHO05D010727 6.0e-16 87.8 77 63.6
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 6.0e-16 87.8 89 60.7
Duzib235G0863 Durio zibethinus HOM05D008630 ORTHO05D010727 1.0e-15 87.0 84 61.9
THA.LOC104818037 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 1.8e-15 86.3 81 60.5
Cpa.g.sc336.6 Carica papaya HOM05D008630 ORTHO05D010727 1.1e-14 83.6 86 59.3
Duzib192G0134 Durio zibethinus HOM05D008630 ORTHO05D010727 1.9e-14 82.8 80 57.5
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 1.9e-14 82.8 86 55.8
Potri.001G172900 Populus trichocarpa HOM05D008630 ORTHO05D010727 4.3e-14 81.6 80 58.8
QL05p027788 Quercus lobata HOM05D008630 ORTHO05D010727 3.7e-13 78.6 95 52.6
Eucgr.F02549 Eucalyptus grandis HOM05D008630 ORTHO05D010727 8.1e-13 77.4 87 51.7
Sabra01G0138700 Salix brachista HOM05D008630 ORTHO05D010727 4.0e-12 75.1 112 44.6
Dinv38096 Davidia involucrata HOM05D008630 ORTHO05D010727 5.3e-12 74.7 92 51.1
Duzib160G0171 Durio zibethinus HOM05D008630 ORTHO05D010727 1.2e-11 73.6 80 53.8
Duzib160G0348 Durio zibethinus HOM05D008630 ORTHO05D010727 1.2e-11 73.6 80 53.8
Sabra03G0035300 Salix brachista HOM05D008630 ORTHO05D010727 1.5e-11 73.2 90 51.1
BcaC08g43443 Brassica carinata HOM05D008630 ORTHO05D010727 2.6e-11 72.4 88 53.4
C06p08110 Brassica napus HOM05D008630 ORTHO05D010727 2.6e-11 72.4 88 53.4
BolC6t35894H Brassica oleracea HOM05D008630 ORTHO05D010727 2.6e-11 72.4 88 53.4
Dinv30570 Davidia involucrata HOM05D008630 ORTHO05D010727 2.2e-10 69.3 117 41.0
MD17G1204300 Malus domestica HOM05D008630 ORTHO05D010727 2.9e-10 68.9 108 45.4
BcaC08g44009 Brassica carinata HOM05D008630 ORTHO05D010727 6.4e-10 67.8 90 50.0
C06p14210 Brassica napus HOM05D008630 ORTHO05D010727 6.4e-10 67.8 90 50.0
A05p18860 Brassica napus HOM05D008630 ORTHO05D010727 8.4e-10 67.4 90 51.1
BraA05t20782Z Brassica rapa HOM05D008630 ORTHO05D010727 8.4e-10 67.4 90 51.1
AL1G60950 Arabidopsis lyrata HOM05D008630 ORTHO05D010727 1.1e-09 67.0 90 47.8
AT1G52680 Arabidopsis thaliana HOM05D008630 ORTHO05D010727 1.1e-09 67.0 90 47.8
Thhalv10011854m.g Eutrema salsugineum HOM05D008630 ORTHO05D010727 1.1e-09 67.0 90 53.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.1e-09 67.0 88 48.9
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 1.1e-09 67.0 77 54.5
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.4e-09 66.6 77 53.2
A06p01690 Brassica napus HOM05D008630 ORTHO05D010727 1.9e-09 66.2 88 51.1
BraA06t23387Z Brassica rapa HOM05D008630 ORTHO05D010727 1.9e-09 66.2 88 51.1
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.9e-09 66.2 69 56.5
BcaB02g10977 Brassica carinata HOM05D008630 ORTHO05D010727 2.4e-09 65.9 88 47.7
PGR102G1667 Punica granatum HOM05D008630 ORTHO05D010727 3.2e-09 65.5 86 48.8
BraA08t32251Z Brassica rapa HOM05D008630 ORTHO05D010727 5.5e-09 64.7 90 47.8
A08p01970 Brassica napus HOM05D008630 ORTHO05D010727 7.1e-09 64.3 90 48.9
Sp1g13780 Schrenkiella parvula HOM05D010527 ORTHO05D013747 7.1e-09 64.3 82 48.8
Carub.0001s1521 Capsella rubella HOM05D010527 ORTHO05D013747 9.3e-09 63.9 81 51.9
Sp1g39220 Schrenkiella parvula HOM05D008630 ORTHO05D010727 1.2e-08 63.5 89 46.1
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.6e-08 63.2 81 46.9
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.1e-08 62.8 89 49.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.1e-08 62.8 89 48.3
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 2.7e-08 62.4 81 46.9
Thhalv10009177m.g Eutrema salsugineum HOM05D010527 ORTHO05D013747 2.7e-08 62.4 82 48.8
BraA06t24324Z Brassica rapa HOM05D010527 ORTHO05D013747 3.5e-08 62.0 81 53.1
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 3.5e-08 62.0 88 48.9
BolC3t21401H Brassica oleracea HOM05D008630 ORTHO05D010727 6.0e-08 61.2 90 47.8
BolC5t30095H Brassica oleracea HOM05D010527 ORTHO05D013747 1.0e-07 60.5 81 51.9
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.3e-07 60.1 88 43.2
BcaC05g25484 Brassica carinata HOM05D010527 ORTHO05D013747 1.8e-07 59.7 81 50.6
Carub.0001s4167 Capsella rubella HOM05D008630 ORTHO05D010727 1.8e-07 59.7 94 44.7
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.3e-07 59.3 84 50.0
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 2.3e-07 59.3 83 49.4
BcaB03g13062 Brassica carinata HOM05D010527 ORTHO05D013747 3.0e-07 58.9 81 46.9
C08p17170 Brassica napus HOM05D010527 ORTHO05D024503 3.0e-07 58.9 81 49.4
BolC8t49345H Brassica oleracea HOM05D010527 ORTHO05D024503 3.0e-07 58.9 81 49.4
BolC8t49347H Brassica oleracea HOM05D010527 ORTHO05D024503 3.0e-07 58.9 81 49.4
FAN09G1811 Fragaria x ananassa HOM05D027489 ORTHO05D029662 3.9e-07 58.5 109 44.0
GSVIVG01017248001 Vitis vinifera HOM05D008630 ORTHO05D010727 3.9e-07 58.5 62 54.8
Actinidia08811 Actinidia chinensis HOM05D040537 ORTHO05D010727 5.1e-07 58.2 110 38.2
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.7e-07 57.8 84 48.8
A06p11470 Brassica napus HOM05D010527 ORTHO05D013747 6.7e-07 57.8 81 48.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 6.7e-07 57.8 87 46.0
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 8.7e-07 57.4 90 46.7
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 8.7e-07 57.4 81 48.1
AT1G15415 Arabidopsis thaliana HOM05D010527 ORTHO05D013747 1.1e-06 57.0 81 46.9
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.1e-06 57.0 49 63.3
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-06 56.6 81 46.9
C05p13590 Brassica napus HOM05D010527 ORTHO05D013747 1.9e-06 56.2 81 46.9
Sc10g0005700 Simmondsia chinensis HOM05D008630 ORTHO05D010727 2.5e-06 55.8 81 48.1
AL1G27530 Arabidopsis lyrata HOM05D010527 ORTHO05D013747 3.3e-06 55.5 81 45.7
A08p31590 Brassica napus HOM05D010527 ORTHO05D013747 3.3e-06 55.5 70 51.4
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.3e-06 55.5 83 47.0
Aa31LG10G2360 Aethionema arabicum HOM05D008630 ORTHO05D010727 4.3e-06 55.1 94 43.6
COL.COLO4_12894 Corchorus olitorius HOM05D008630 ORTHO05D010727 4.3e-06 55.1 47 66.0
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 4.3e-06 55.1 86 44.2
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 5.6e-06 54.7 45 60.0
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 5.6e-06 54.7 39 71.8
BcaC07g38788 Brassica carinata HOM05D010527 ORTHO05D013747 7.4e-06 54.3 81 49.4
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 7.4e-06 54.3 73 46.6
Aqoxy7G02083 Aquilegia oxysepala HOM05D008630 ORTHO05D010727 9.6e-06 53.9 101 39.6
CARHR015970 Cardamine hirsuta HOM05D010527 ORTHO05D013747 9.6e-06 53.9 81 48.1
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 9.6e-06 53.9 36 72.2
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 9.6e-06 53.9 83 45.8


User provided reference genes

Program Settings