Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 4.0e-47 191.0 94 100.0
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 7.6e-46 186.8 94 97.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 2.7e-43 178.3 94 92.6
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.0e-42 174.9 94 89.4
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 9.6e-41 169.9 92 85.9
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.6e-40 169.1 92 88.0
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 3.6e-40 167.9 92 84.8
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.1e-39 166.4 92 87.0
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.8e-39 165.6 82 96.3
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.4e-39 165.2 92 85.9
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 2.4e-39 165.2 93 83.9
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 3.1e-39 164.9 92 85.9
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 3.1e-39 164.9 92 83.7
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 5.3e-39 164.1 92 84.8
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 5.3e-39 164.1 92 84.8
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.9e-39 163.7 92 84.8
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 6.9e-39 163.7 92 83.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 9.0e-39 163.3 92 84.8
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.2e-38 162.9 92 83.7
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.5e-38 162.5 92 84.8
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 2.0e-38 162.2 92 84.8
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.0e-38 162.2 92 83.7
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.0e-38 162.2 92 83.7
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 82.6
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 83.7
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 83.7
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 83.7
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 83.7
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 83.7
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 82.6
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 4.5e-38 161.0 92 83.7
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.8e-38 160.6 89 85.4
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 5.8e-38 160.6 92 82.6
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.6e-38 160.2 88 87.5
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 9.9e-38 159.8 93 82.8
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 9.9e-38 159.8 92 83.7
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.3e-37 159.5 88 85.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.3e-37 159.5 92 82.6
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.3e-37 159.5 92 82.6
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-37 159.5 92 82.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-37 159.5 92 82.6
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 1.7e-37 159.1 86 88.4
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.7e-37 159.1 92 81.5
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.2e-37 158.7 91 82.4
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.9e-37 158.3 92 80.4
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 3.8e-37 157.9 92 81.5
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 6.4e-37 157.1 94 80.9
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 8.4e-37 156.8 92 80.4
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 8.4e-37 156.8 92 79.3
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.1e-36 156.4 89 78.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.1e-36 156.4 92 79.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.4e-36 156.0 92 80.4
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.4e-36 156.0 92 80.4
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 1.9e-36 155.6 92 81.5
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.9e-36 155.6 92 81.5
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.9e-36 155.6 86 84.9
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 79.6
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 77.4
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 77.4
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.4e-36 155.2 89 77.5
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 2.4e-36 155.2 92 81.5
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 92 79.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.2e-36 154.8 91 81.3
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.2e-36 154.8 92 81.5
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 3.2e-36 154.8 92 78.3
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 3.2e-36 154.8 92 78.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 4.2e-36 154.5 92 81.5
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.2e-36 154.5 92 78.3
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 5.4e-36 154.1 91 80.2
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 5.4e-36 154.1 91 80.2
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 9.3e-36 153.3 92 73.9
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 9.3e-36 153.3 94 80.9
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 79.3
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 77.2
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 77.2
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 77.2
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 77.2
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 77.2
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.1e-35 152.1 93 76.3
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.1e-35 152.1 79 91.1
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 3.5e-35 151.4 89 76.4
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 3.5e-35 151.4 92 76.1
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.5e-35 151.4 92 76.1
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 3.5e-35 151.4 92 79.3
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.6e-35 151.0 92 76.1
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.6e-35 151.0 92 76.1
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.0e-34 149.8 86 81.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.0e-34 149.8 93 78.5
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.0e-34 149.8 93 78.5
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 78 89.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-34 149.4 92 76.1
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.8e-34 149.1 86 81.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.3e-34 148.7 89 77.5
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 2.3e-34 148.7 93 75.3
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.9e-34 147.9 89 74.2
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.9e-34 147.9 92 75.0
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-34 147.9 85 81.2
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-34 147.9 85 81.2
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 3.9e-34 147.9 92 79.3
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 5.1e-34 147.5 91 79.1
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 6.7e-34 147.1 86 81.4
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 8.7e-34 146.7 92 75.0
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 8.7e-34 146.7 92 75.0
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 8.7e-34 146.7 92 73.9
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 86 80.2
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-33 146.4 92 75.0
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-33 146.4 81 84.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 93 75.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.9e-33 145.6 93 73.1
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 93 73.1
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 93 73.1
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.9e-33 145.6 93 73.1
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.9e-33 145.6 93 73.1
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.5e-33 145.2 86 81.4
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 3.3e-33 144.8 92 75.0
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 3.3e-33 144.8 86 81.4
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.3e-32 142.9 78 85.9
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 118 62.7
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-32 142.1 93 72.0
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 83 78.3
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 2.1e-32 142.1 83 78.3
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.1e-32 142.1 93 72.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 3.7e-32 141.4 92 72.8
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 8.1e-32 140.2 85 72.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 8.1e-32 140.2 95 76.8
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.5e-30 136.0 71 93.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-30 136.0 90 74.4
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.5e-30 136.0 71 88.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.4e-30 134.8 92 72.8
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 4.5e-30 134.4 70 91.4
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 7.6e-30 133.7 70 91.4
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-29 132.9 86 69.8
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.2e-29 132.1 76 80.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 2.9e-29 131.7 70 87.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.1e-28 129.8 71 87.3
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.2e-28 128.3 71 84.5
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 4.2e-28 127.9 70 85.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 9.3e-28 126.7 70 85.7
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 6.0e-27 124.0 70 81.4
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.0e-26 123.2 71 80.3
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.8e-26 122.5 115 54.8
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.3e-26 122.1 71 84.5
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 6.7e-26 120.6 71 83.1
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 4.8e-24 114.4 71 80.3
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.1e-23 111.7 92 59.8
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 4.0e-23 111.3 86 70.9
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.2e-22 109.8 67 73.1
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 6.5e-21 104.0 50 92.0
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.4e-20 102.8 79 63.3
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 7.1e-20 100.5 91 61.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.0e-18 95.1 97 52.6
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.1e-17 93.2 76 59.2
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.5e-17 92.0 76 57.9
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 88.6 51 78.4
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 88.6 51 78.4
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 88.6 51 78.4
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 88.6 51 78.4
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 58 72.4
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.3e-15 84.3 49 81.6
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.5e-14 82.8 48 79.2
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.5e-14 81.3 49 75.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.9e-14 80.9 47 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 7.7e-14 80.5 77 50.6
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 4.2e-12 74.7 54 66.7
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.0e-10 70.1 56 57.1
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.0e-09 65.9 43 69.8
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 4.5e-06 54.7 26 92.3


User provided reference genes

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