Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.3e-69 265.4 128 100.0
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 9.3e-63 243.4 128 91.4
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 7.1e-55 217.2 115 90.4
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 4.8e-51 204.5 117 82.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.2e-51 203.8 117 81.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 8.2e-51 203.8 108 88.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.8e-50 202.6 117 81.2
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.8e-50 202.6 117 80.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.1e-50 201.8 117 79.5
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.3e-50 201.1 117 80.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.3e-50 201.1 117 79.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.2e-49 199.9 117 79.5
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.2e-49 199.9 108 86.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.0e-49 199.1 117 79.5
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.0e-49 199.1 117 78.6
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.6e-49 198.7 117 79.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.6e-49 198.7 113 81.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 4.5e-49 198.0 116 79.3
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.8e-49 197.6 117 77.8
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.8e-49 197.6 117 77.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.7e-48 196.1 108 85.2
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 5.0e-48 194.5 114 81.6
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 5.0e-48 194.5 114 81.6
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.5e-48 194.1 108 83.3
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.1e-47 193.4 113 79.6
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-47 193.0 117 77.8
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.5e-47 192.2 113 77.9
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.5e-47 192.2 116 78.4
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.5e-47 192.2 115 80.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 4.2e-47 191.4 117 76.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.2e-47 191.4 114 77.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.5e-47 191.0 116 77.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.5e-47 191.0 116 77.6
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 7.1e-47 190.7 117 75.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 7.1e-47 190.7 112 77.7
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.6e-46 189.5 116 76.7
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.6e-46 189.5 117 76.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.1e-46 189.1 116 77.6
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.1e-46 189.1 116 77.6
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.7e-46 188.7 113 77.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.7e-46 188.7 113 77.9
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.7e-46 188.7 116 77.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.7e-46 188.7 114 78.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-46 187.2 116 76.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 7.9e-46 187.2 116 76.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 7.9e-46 187.2 116 76.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 7.9e-46 187.2 116 76.7
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 7.9e-46 187.2 114 76.3
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.9e-46 187.2 108 82.4
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-45 186.8 116 76.7
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.0e-45 186.8 117 75.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.3e-45 186.4 108 81.5
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 75.9
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 75.9
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 75.9
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 75.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 75.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.3e-45 186.4 108 79.6
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.3e-45 186.4 114 76.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.8e-45 186.0 113 77.9
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.8e-45 186.0 112 76.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.3e-45 185.7 108 80.6
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.3e-45 185.7 113 77.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.3e-45 185.7 116 75.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.9e-45 184.9 108 80.6
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.9e-45 184.9 114 75.4
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 5.1e-45 184.5 114 75.4
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 6.7e-45 184.1 112 76.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.7e-45 184.1 104 81.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 6.7e-45 184.1 113 75.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 6.7e-45 184.1 112 76.8
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.7e-45 184.1 108 78.7
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 6.7e-45 184.1 136 66.9
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 8.7e-45 183.7 104 82.7
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 8.7e-45 183.7 117 75.2
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.1e-44 183.3 117 75.2
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-44 183.3 118 73.7
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.9e-44 182.6 104 81.7
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.9e-44 182.6 104 80.8
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 1.9e-44 182.6 108 78.7
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.9e-44 182.6 117 74.4
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-44 182.6 108 78.7
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-44 182.6 104 80.8
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.5e-44 182.2 108 79.6
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 4.3e-44 181.4 108 79.6
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.3e-44 181.4 113 75.2
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 7.4e-44 180.6 116 71.6
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 7.4e-44 180.6 114 73.7
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-43 179.9 104 78.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.6e-43 179.5 112 73.2
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 2.8e-43 178.7 109 77.1
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 3.7e-43 178.3 112 73.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 3.7e-43 178.3 109 76.1
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 3.7e-43 178.3 108 76.9
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 4.8e-43 177.9 108 75.9
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 6.3e-43 177.6 104 77.9
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 6.3e-43 177.6 101 79.2
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 8.2e-43 177.2 101 79.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.1e-42 176.8 114 74.6
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.8e-42 176.0 96 84.4
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.4e-42 175.6 113 69.9
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.4e-42 175.6 108 75.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.4e-42 175.6 104 76.0
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.4e-42 175.6 104 76.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.1e-42 175.3 109 74.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.1e-42 174.9 120 67.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.1e-42 174.9 120 67.5
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 4.1e-42 174.9 104 72.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 5.3e-42 174.5 114 71.9
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.5e-41 172.9 112 71.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.6e-41 172.2 108 74.1
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 4.5e-41 171.4 151 59.6
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.0e-40 170.2 100 80.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.8e-40 168.3 104 70.2
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 5.0e-40 167.9 102 74.5
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 6.5e-40 167.5 117 70.1
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 8.5e-40 167.2 100 74.0
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 7.2e-39 164.1 181 50.8
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.0e-37 160.2 119 65.5
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 8.8e-37 157.1 91 81.3
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.0e-32 141.4 95 67.4
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.2e-31 137.5 108 64.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.2e-30 136.7 85 75.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.1e-28 130.2 115 60.0
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 4.4e-28 128.3 99 56.6
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 5.7e-28 127.9 98 61.2
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.2e-27 125.9 116 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.0e-24 117.1 113 48.7
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.2e-23 111.7 85 65.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 2.1e-22 109.4 115 47.8
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.0e-21 107.1 97 52.6
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-21 105.5 108 50.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.1e-20 103.6 60 71.7
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.7e-19 99.8 59 72.9
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 4.8e-19 98.2 83 62.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 7.0e-18 94.4 50 78.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-17 93.6 57 70.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.0e-17 92.8 54 83.3
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.0e-17 92.8 55 83.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 7.7e-17 90.9 110 46.4
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 3.8e-16 88.6 55 72.7
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.5e-15 86.7 137 39.4
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.6e-14 83.2 95 46.3
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.1e-14 82.8 59 62.7
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-13 79.3 46 73.9
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 5.2e-13 78.2 79 54.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.7e-09 65.9 86 38.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 5.5e-07 58.2 83 45.8


User provided reference genes

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