Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 0.0e+00 1410.2 725 100.0
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 0.0e+00 1289.2 740 91.6
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 0.0e+00 1105.5 760 79.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 7.6e-279 963.8 743 71.3
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.8e-86 324.7 756 36.4
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-81 308.5 756 34.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.7e-81 308.1 754 35.7
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.4e-78 297.7 767 33.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 8.9e-78 295.8 764 33.4
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.6e-74 283.5 755 32.6
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.1e-70 270.8 756 31.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.6e-69 267.7 753 31.1
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 5.8e-69 266.5 760 31.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.3e-68 265.4 754 32.0
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.9e-68 264.2 726 32.8
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 4.9e-68 263.5 734 33.0
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 8.4e-68 262.7 756 32.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 9.3e-67 259.2 754 31.7
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.5e-66 257.3 755 31.9
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.3e-65 255.4 735 31.2
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.9e-65 253.8 752 31.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.1e-64 252.3 750 31.9
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.2e-60 238.0 806 30.0
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.9e-59 235.0 748 31.6
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.2e-58 232.3 754 31.6
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-57 229.2 760 30.5
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 1.3e-57 228.8 766 30.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.3e-56 223.8 784 29.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.4e-54 218.8 762 28.3
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.0e-54 217.2 801 29.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.0e-54 217.2 782 29.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.0e-53 214.9 391 39.6
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.9e-52 211.1 763 28.8
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.9e-52 210.3 733 30.7
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 4.2e-51 207.2 779 29.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 7.1e-51 206.5 747 29.0
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.2e-50 205.7 742 27.4
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.6e-50 203.8 738 30.8
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.7e-49 199.9 740 30.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.9e-48 198.4 758 28.1
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.9e-48 198.4 766 29.4
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.1e-47 194.9 776 28.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.1e-47 194.9 540 31.9
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 2.1e-47 194.9 778 29.0
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.1e-47 194.9 735 29.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.8e-44 184.1 739 28.6
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.1e-43 182.6 767 27.8
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.1e-43 182.6 744 30.0
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 5.5e-43 180.3 784 28.4
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.6e-42 178.7 770 27.1
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.7e-42 177.9 411 34.5
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 3.5e-42 177.6 758 28.4
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.3e-41 174.9 744 28.8
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 3.9e-41 174.1 752 27.9
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 6.7e-41 173.3 518 31.5
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.8e-39 167.9 794 27.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.1e-38 164.1 821 26.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 3.4e-37 161.0 740 28.6
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.1e-35 156.0 764 25.5
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.2e-35 154.1 490 31.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 9.4e-35 152.9 551 30.5
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.7e-32 143.7 425 31.3
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.7e-32 143.7 410 31.7
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 9.7e-32 142.9 767 28.2
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.7e-31 141.0 487 30.0
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.1e-30 137.9 391 32.5
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 9.1e-30 136.3 494 29.4
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 3.4e-29 134.4 413 31.2
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.9e-29 133.7 393 31.3
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.0e-28 132.9 587 28.1
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.0e-28 132.9 515 29.3
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 8.5e-28 129.8 549 28.2
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 8.5e-28 129.8 408 31.6
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.4e-27 126.3 390 31.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.1e-26 125.2 511 27.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.9e-25 120.9 394 29.9
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.3e-24 117.9 478 29.9
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.3e-23 115.9 800 23.1
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 3.1e-22 111.3 269 32.7
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.1e-22 111.3 231 34.2
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.1e-22 109.8 405 29.6
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.2e-21 109.4 472 25.2
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 2.0e-21 108.6 351 30.2
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.7e-20 105.5 533 27.2
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.1e-19 102.8 472 26.3
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.0e-17 96.3 323 31.0
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.3e-16 91.3 504 27.4
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 8.2e-15 86.7 235 32.8
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.1e-14 86.3 663 25.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 1.1e-14 86.3 530 26.2
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.1e-14 86.3 394 26.4
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.8e-14 85.5 322 31.1
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.8e-14 85.5 322 31.1
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.8e-14 85.5 322 31.1
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 2.4e-14 85.1 405 26.2
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.1e-14 84.3 449 25.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 3.5e-13 81.3 223 31.4
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 4.5e-13 80.9 443 27.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 4.5e-13 80.9 339 26.5
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.5e-13 80.9 519 25.0
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.9e-13 80.5 418 25.6
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 7.7e-13 80.1 331 28.4
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.0e-12 79.7 207 31.9
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.7e-12 79.0 337 27.0
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.7e-12 79.0 386 26.2
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-12 78.6 280 30.7
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.2e-12 78.6 280 30.7
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.8e-12 77.8 420 25.2
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 3.8e-12 77.8 277 30.0
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.0e-12 77.4 396 28.5
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 8.5e-12 76.6 334 28.4
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.5e-11 75.9 347 29.1
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.9e-11 75.5 280 29.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.9e-11 75.5 280 29.3
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-10 72.8 501 26.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-10 72.4 279 28.0
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 3.0e-09 68.2 78 46.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 5.2e-09 67.4 302 26.5
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.2e-08 66.2 262 31.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.6e-08 65.1 211 28.4
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.7e-08 63.9 213 31.0
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 3.7e-07 61.2 214 30.4
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.1e-06 58.2 206 26.7


User provided reference genes

Program Settings