Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 6.2e-26 122.1 253 100.0
CsaV3_2G019770 Cucumis sativus L. HOM05D003347 ORTHO05D003821 2.0e-16 90.5 175 98.9
ClCG02G000100 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.4e-16 89.7 180 95.6
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.5e-11 74.3 56 71.4
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.3e-11 73.2 55 74.5
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.3e-11 72.8 104 55.8
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.3e-11 72.8 104 55.8
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.3e-11 72.8 104 49.0
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 7.3e-11 72.0 55 70.9
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 9.6e-11 71.6 55 72.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.2e-10 71.2 96 53.1
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.2e-10 71.2 96 61.5
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.6e-10 70.9 94 66.0
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.6e-10 70.9 97 70.1
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 2.8e-10 70.1 94 60.6
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 2.8e-10 70.1 95 78.9
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.8e-10 70.1 55 70.9
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 6.2e-10 68.9 47 76.6
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.1e-09 68.2 47 76.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-09 68.2 104 61.5
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.8e-09 67.4 96 55.2
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.8e-09 67.4 55 67.3
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.8e-09 67.4 102 50.0
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 3.1e-09 66.6 97 67.0
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.0e-09 66.2 104 58.7
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.0e-09 66.2 55 69.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 5.2e-09 65.9 47 78.7
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 9.0e-09 65.1 55 65.5
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 9.0e-09 65.1 104 75.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 9.0e-09 65.1 105 44.8
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 9.0e-09 65.1 55 65.5
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 9.0e-09 65.1 55 65.5
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.2e-08 64.7 55 63.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.2e-08 64.7 95 69.5
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.0e-08 63.9 46 76.1
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 2.6e-08 63.5 55 67.3
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.6e-08 63.5 55 63.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.6e-08 63.5 55 63.6
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.6e-08 63.5 46 71.7
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 2.6e-08 63.5 55 63.6
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.6e-08 63.5 105 57.1
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 2.6e-08 63.5 55 63.6
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.4e-08 63.2 55 65.5
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.4e-08 62.8 55 65.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 4.4e-08 62.8 55 63.6
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 5.8e-08 62.4 46 71.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 5.8e-08 62.4 47 72.3
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 9.9e-08 61.6 55 61.8
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 9.9e-08 61.6 55 61.8
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.9e-08 61.6 103 48.5
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.3e-07 61.2 46 71.7
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.3e-07 61.2 45 73.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.3e-07 61.2 44 72.7
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.7e-07 60.8 95 60.0
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-07 60.5 46 71.7
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.9e-07 60.1 55 70.9
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 2.9e-07 60.1 46 71.7
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 2.9e-07 60.1 94 57.4
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 2.9e-07 60.1 55 60.0
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 3.8e-07 59.7 49 63.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 3.8e-07 59.7 90 46.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 4.9e-07 59.3 46 69.6
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.9e-07 59.3 55 60.0
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 4.9e-07 59.3 45 71.1
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.4e-07 58.9 55 58.2
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.4e-07 58.9 95 63.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 8.4e-07 58.5 47 66.0
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.1e-06 58.2 44 68.2
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.1e-06 58.2 47 66.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.1e-06 58.2 47 66.0
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.1e-06 58.2 37 81.1
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.1e-06 58.2 46 60.9
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.1e-06 58.2 47 66.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.4e-06 57.8 95 64.2
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.4e-06 57.8 95 64.2
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-06 57.8 46 65.2
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.4e-06 57.8 46 65.2
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.4e-06 57.8 90 74.4
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-06 57.4 44 68.2
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.9e-06 57.4 45 66.7
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 1.9e-06 57.4 55 58.2
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.4e-06 57.0 46 67.4
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 3.2e-06 56.6 47 63.8
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.2e-06 56.6 45 66.7
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 4.2e-06 56.2 45 66.7
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 5.4e-06 55.8 44 63.6
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.4e-06 55.8 93 58.1
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 5.4e-06 55.8 44 65.9
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 7.1e-06 55.5 47 61.7
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 7.1e-06 55.5 106 65.1
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 7.1e-06 55.5 40 70.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 9.3e-06 55.1 47 61.7
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 9.3e-06 55.1 46 65.2


User provided reference genes

Program Settings