Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 1.5e-176 622.9 330 100.0
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 4.1e-171 604.7 330 96.7
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 1.9e-123 446.4 331 78.5
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 1.4e-107 393.7 242 81.0
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 2.3e-105 386.3 338 65.1
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 1.1e-104 384.0 301 69.8
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.9e-104 383.3 251 76.5
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 2.5e-104 382.9 284 72.9
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 2.5e-104 382.9 283 70.3
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 1.6e-103 380.2 329 66.9
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 6.2e-103 378.3 244 77.5
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 8.1e-103 377.9 336 65.8
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 1.1e-102 377.5 330 66.4
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 2.4e-102 376.3 330 64.8
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.0e-102 375.6 244 77.0
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 4.0e-102 375.6 329 65.7
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 5.3e-102 375.2 280 74.6
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 1.2e-101 374.0 221 84.6
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 4.5e-101 372.1 237 78.5
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 5.8e-101 371.7 242 77.7
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 1.0e-100 370.9 323 63.8
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 1.3e-100 370.5 333 62.2
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 1.3e-100 370.5 245 75.5
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 1.7e-100 370.2 237 78.5
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 2.2e-100 369.8 239 77.8
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 8.4e-100 367.9 220 82.3
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 2.5e-99 366.3 236 78.0
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 2.5e-99 366.3 217 90.8
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 3.2e-99 365.9 239 77.4
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 4.2e-99 365.5 333 65.2
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 4.2e-99 365.5 334 61.1
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 5.5e-99 365.2 257 75.5
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 9.3e-99 364.4 251 71.7
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 2.7e-98 362.8 311 66.2
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 3.9e-97 359.0 322 64.6
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 5.1e-97 358.6 221 80.1
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 1.5e-96 357.1 233 73.0
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 1.9e-96 356.7 219 80.4
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 1.9e-96 356.7 218 79.4
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 2.5e-96 356.3 344 59.9
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 2.5e-96 356.3 235 74.5
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 3.3e-96 355.9 233 74.7
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 4.3e-96 355.5 256 70.3
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 4.3e-96 355.5 258 71.3
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 5.7e-96 355.1 248 72.6
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 7.4e-96 354.8 240 75.0
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.3e-95 354.0 258 70.9
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 1.3e-95 354.0 217 80.6
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 1.6e-95 353.6 218 75.7
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.8e-95 352.8 242 74.4
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 6.9e-94 348.2 286 67.5
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 2.6e-93 346.3 211 76.8
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 3.4e-93 345.9 261 67.0
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 7.1e-91 338.2 204 80.9
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 1.6e-90 337.0 278 66.9
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 1.6e-90 337.0 243 72.0
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 2.1e-90 336.7 361 55.7
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 7.9e-90 334.7 199 78.9
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 7.9e-90 334.7 256 66.8
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 1.0e-89 334.3 339 57.2
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 2.3e-89 333.2 330 58.5
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 3.3e-88 329.3 218 76.1
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 3.3e-88 329.3 212 73.6
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 7.4e-88 328.2 198 81.8
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.3e-87 327.4 218 75.2
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 1.4e-86 323.9 325 59.4
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 3.1e-86 322.8 324 57.4
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 6.9e-86 321.6 210 72.4
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 4.5e-85 318.9 210 76.2
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 5.9e-85 318.5 225 70.7
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 7.7e-85 318.2 254 62.2
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 1.0e-84 317.8 196 79.6
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.9e-84 316.2 197 77.2
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 3.2e-83 312.8 196 78.6
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 3.2e-83 312.8 355 52.4
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.2e-82 310.8 233 68.2
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 1.6e-82 310.5 174 84.5
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 3.9e-81 305.8 177 81.9
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 5.1e-81 305.4 245 63.7
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 5.7e-80 302.0 301 56.1
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 6.3e-79 298.5 342 49.1
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 6.3e-79 298.5 292 58.2
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 8.2e-79 298.1 221 68.3
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 8.2e-79 298.1 213 70.4
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 2.6e-77 293.1 215 67.9
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 5.9e-77 292.0 202 67.3
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 3.8e-76 289.3 216 69.4
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 1.4e-75 287.3 217 67.3
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 5.5e-75 285.4 338 51.2
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 2.7e-74 283.1 215 63.7
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 4.7e-74 282.3 229 64.2
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 8.8e-73 278.1 206 62.1
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 3.2e-67 259.6 241 53.1
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 2.3e-65 253.4 337 51.9
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 3.0e-65 253.1 359 48.7
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 3.0e-65 253.1 359 48.7
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 1.5e-64 250.8 207 62.3
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 7.0e-62 241.9 179 68.7
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 9.1e-62 241.5 174 67.2
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 2.3e-57 226.9 171 65.5
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 6.8e-57 225.3 167 72.5
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 4.4e-56 222.6 232 50.4
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 8.3e-55 218.4 229 53.3
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 4.1e-54 216.1 168 67.9
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 5.4e-54 215.7 161 67.7
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 4.5e-53 212.6 213 52.6
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 4.5e-53 212.6 215 52.1
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.6e-50 203.0 219 50.7
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 2.0e-48 197.2 191 53.4
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 2.3e-44 183.7 234 49.1
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.1e-35 154.8 90 82.2
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.6e-34 151.0 90 80.0
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 4.0e-33 146.4 91 74.7
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 1.6e-26 124.4 233 33.5
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 9.8e-24 115.2 69 87.0
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 3.9e-20 103.2 167 34.7
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 2.5e-19 100.5 154 39.0
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 3.3e-19 100.1 175 34.9
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 4.3e-19 99.8 61 83.6
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 9.2e-14 82.0 48 85.4
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.3e-11 73.6 48 83.3
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 8.1e-10 68.9 67 55.2
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 5.4e-06 56.2 33 87.9


User provided reference genes

Program Settings